Mp3g06900
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:2.40.40.10 | - |
| PRINTS | PR01225 | Expansin/Lol pI family signature |
| PANTHER | PTHR31867 | EXPANSIN-A15 |
| SUPERFAMILY | SSF49590 | PHL pollen allergen |
| Pfam | PF03330 | Lytic transglycolase |
| SMART | SM00837 | dpbb_1 |
| PRINTS | PR01226 | Expansin signature |
| Pfam | PF01357 | Expansin C-terminal domain |
| ProSiteProfiles | PS50843 | Expansin, Cellulose-binding-like domain profile. |
| SUPERFAMILY | SSF50685 | Barwin-like endoglucanases |
| Gene3D | G3DSA:2.60.40.760 | - |
| CDD | cd22274 | DPBB_EXPA_N |
| ProSiteProfiles | PS50842 | Expansin, family-45 endoglucanase-like domain profile. |
| KEGG | K20628 | expansin |
| MapolyID | Mapoly0006s0158 | - |
| GO | GO:0005576 | extracellular region |
| GO | GO:0009664 | plant-type cell wall organization |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpExpansin17 | Cell wall related protein | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g06900 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g06900.1 GACATCACAA ATCACGCAAA GTAGTTCACG ACACAATAGT ATTCTCCTGA ATTGCTGTTT GTGGCTGCTG ATTCCACATA CAATCCAAAC TCCACATATA TTTGTAAAAT AATGTTTTGT TATGTTCAGT ACTCAAGCTC TTAATTAGTA GTATACGTCA TGCTCGATTT TCTGAGCTTA AAGGGCTGAA CTTCGATCAT TATTTTGGCT CAGGTCGAAC CACACGATAA GCTCTTGTTT TCGCCAAAGC TTCGAAGTAT TGGAAGTAGC TCAACGAGTG TGAGGAGTTT GGCATTCTTC TAACATTCTT ATAGAAAAGG AGATAAAATT GTTGATTTGC CGACATCTAG ACATCGTCAG CGCTTACATC TACAAGGTGG AATGTTGCAG CAAAGACTGT CTCTATATAT CCTCGATCAA TTGACCTCTC TAAGTCTTGC CTATTGTATT TCTGAAATGA CACGGTCGAT GTTCTCTTGC TTTCTCATAA ATTTCATACG TTTGTTGTTG ACTTGCTTTA TATTATAGGG ATCCTCGGGC CTTATCTTAA AGACTTCAGA TTCAGTTTTA GCAGTCAATC CATACTCATG ATCATCCATT ACAGACAGTA GTTTCTCGTA CTCTCGAGCT TGACATCAGT TGATGACTAC GCATTTAGTC CAGCAATATT CGATTGCGAC CAAAGTGGAG AAGAAGACAT ATTTCGCGTC AAGTGCCGTT GGTTTATTTG GTTATCTAGT TTCGCTTTCC GTAGAAATAT TTTTCTATCT GGTGGTCCTT TCTACGACTA GTTCCGGCAT GGGATTCTAA CGCCGTACAT TCAATTTCTG AAGTTTTGAG CATTTACTCA ACTTGCGACG GAATTTTTGG TACATTTGCT CTTGTTAGCT GCAAAAACTA AGATGTCAGA TTTGGTTGAT CTCACCTGGG CTCATCGATG AAAGTTTAAT GATTTAGCTT GAGCCTGTTT TCACCGTCAC TGACATCGCA ACTTCTCAAT GCAAATGCAC GAATTTGTAT TAGCAGATTG TATGTTCAGG AGTTAGCTCC TTAGCATAGG ATACTCAAGT GCCATCCTAA CTCGAGCATG GGATGAAGTT CAGTATGAAG CTTGCGCTCG TTCAGTTCAG GCCTGTGCAC TTAATTCTGA CCTTCAATCA ATCATGACCT CTTTCGCATA TGTGCGTGTC TCTGCACAGT TTTGAAATGG AAACAATGAC CACGCGCTGC TCTTGGGCTG CTCCTCGGCA TCCAACTCGA GTTTGGGAAG TCCTCTTAAT TGCAGTTATG ACCTGCGTCT TCAGAACTGC GCAAGTGGCA ACTGCTCAAA ATCCATGGGA AGTAACGGAG TTTACGAGGG GTGCTCGCGC TACATATTAC GGTGGAAACG ACGCCTCCGG CACCTTAGGT TCGTTCCGGA TCATTGCAGG GATTCAAAGG CTTCACACCA CCTTTTCTTC CCTTGTACTT TTCATTCACT TCGCTGAACT GGGCCATGGC GCTGGTTGAC CTGCAGATAA TATTCATAAG CACGAATTTT GAGACCCCAA AGTGAAATCC CGCCATTGTA TTCTACTCCT TGATTAGTCT CTGAGAATAT TAGGGAGCTA GAACCAACCT CGTCATCGTG TATACGTGTA CAATTGACCT TTATGTGGAT CGACATTGGA CTCCTCATTC ATGCTGTAGG TGGTGCGTGC GGATATGGTA ATCTCTTCGA AAATGGCTAC GGGGTGGAGA CGACGGCTCT GAGCACCGCG CTCTTCAACG ATGGGCTCAC CTGCGGAGGC TGCTTTCAGA TACAATGCAT AGCTTCCGAG AGCGACTGGT GCCTGGCGAA TGGAACCGTG AGCATCACTG TCACCGCCAC CAATTTCTGC CCCCCGGGAT CCTTTGGAGG CTGGTGCGAC CCTCCTCAGC CGCATTTCGA CCTCTCCTAC CCCATGTTCG CTACCCTCGC GCAGCCCGTC GGCGGAGTCA TTCCCGTCCA GTACAGGAGG TACGTCCACT GGAGCTCCTA CTACGATCTG TCACCAAGTG TTGCATCTGC AATCTAAAGT CTGTCAGTCT CGAACGAGGT GACCATCGAC GTAAGGCTCG AGTAGAAATC AGTGCTGCTC CCTTGCATCA TCTCCCAGCA GTCCACGGAA TTGATGTGTG CTCGATGCGT GTGCTGATTC AGGGTGTCGT GCTTGAAACA AGGAGGGGTG CGCTTCCAAA TCAACGGGAA TAATTGGTTC TTCCTGGTGC TGGTGATGAA TGTGGCGGGG GCCGGAGACG TGCAGGCAGT GGCGATTAAA GGGACGAGAT CCGAGTGGAT CTCCATGCAA CGAAACTGGG GTCAGAATTG GGCATCAGAC GGACCCCCAG AACTCGTCGG CCAAGCTCTG AGCTTCCGTG TCACTCTGGG ACTGACCAAA GAGACCTTGG ACTTTATCGA TGTGGCACCG GCAGATTGGC AGTTCGGGCA AACTTTCGAA GACGATTCAG GCCTCAACTT TAAATAATGC TTGCATATCA AAATTCGACC CCTGGATCCG AGCACTTTCT CGTGAAAGTC ATGCCTCAAG TCTCAAATCA GAACTCAAGC ATGACTCGTT GATGATTTCC CTCTTAAGTT ACTGTTTTAG GCAGCAAGGT ATGGAGCCTG AATCTAGTAA AGCGACCATA GTTTTAATTT CTTTCATATT AGATGCTACT ATCTAAGTAC GATGCTAAAG TTATAGTCCA TCGCAAAAGG TTTTCAACTG CCGCATGCAG AATGGGGTGA CTTTGTGAAA TACAAAGCGC AATGCACCCA TTTGTAAATG CATGACTAGA ATAGAAAGAA GTTAATATTC ACGAATAATT TTGGTCTAAT ATCATC |
mRNA UTR + CDS |
| >Mp3g06900.1 GACATCACAA ATCACGCAAA GTAGTTCACG ACACAATAGT ATTCTCCTGA ATTGCTGTTT GTGGCTGCTG ATTCCACATA CAATCCAAAC TCCACATATA TTTGTAAAAT AATGTTTTGT TATGTTCAGT ACTCAAGCTC TTAATTAGTA GTATACGTCA TGCTCGATTT TCTGAGCTTA AAGGGCTGAA CTTCGATCAT TATTTTGGCT CAGGTCGAAC CACACGATAA GCTCTTGTTT TCGCCAAAGC TTCGAAGTAT TGGAAGTAGC TCAACGAGTG TGAGGAGTTT GGCATTCTTC TAACATTCTT ATAGAAAAGG AGATAAAATT GTTGATTTGC CGACATCTAG ACATCGTCAG CGCTTACATC TACAAGTTTT GAAATGGAAA CAATGACCAC GCGCTGCTCT TGGGCTGCTC CTCGGCATCC AACTCGAGTT TGGGAAGTCC TCTTAATTGC AGTTATGACC TGCGTCTTCA GAACTGCGCA AGTGGCAACT GCTCAAAATC CATGGGAAGT AACGGAGTTT ACGAGGGGTG CTCGCGCTAC ATATTACGGT GGAAACGACG CCTCCGGCAC CTTAGGTGGT GCGTGCGGAT ATGGTAATCT CTTCGAAAAT GGCTACGGGG TGGAGACGAC GGCTCTGAGC ACCGCGCTCT TCAACGATGG GCTCACCTGC GGAGGCTGCT TTCAGATACA ATGCATAGCT TCCGAGAGCG ACTGGTGCCT GGCGAATGGA ACCGTGAGCA TCACTGTCAC CGCCACCAAT TTCTGCCCCC CGGGATCCTT TGGAGGCTGG TGCGACCCTC CTCAGCCGCA TTTCGACCTC TCCTACCCCA TGTTCGCTAC CCTCGCGCAG CCCGTCGGCG GAGTCATTCC CGTCCAGTAC AGGAGGGTGT CGTGCTTGAA ACAAGGAGGG GTGCGCTTCC AAATCAACGG GAATAATTGG TTCTTCCTGG TGCTGGTGAT GAATGTGGCG GGGGCCGGAG ACGTGCAGGC AGTGGCGATT AAAGGGACGA GATCCGAGTG GATCTCCATG CAACGAAACT GGGGTCAGAA TTGGGCATCA GACGGACCCC CAGAACTCGT CGGCCAAGCT CTGAGCTTCC GTGTCACTCT GGGACTGACC AAAGAGACCT TGGACTTTAT CGATGTGGCA CCGGCAGATT GGCAGTTCGG GCAAACTTTC GAAGACGATT CAGGCCTCAA CTTTAAATAA TGCTTGCATA TCAAAATTCG ACCCCTGGAT CCGAGCACTT TCTCGTGAAA GTCATGCCTC AAGTCTCAAA TCAGAACTCA AGCATGACTC GTTGATGATT TCCCTCTTAA GTTACTGTTT TAGGCAGCAA GGTATGGAGC CTGAATCTAG TAAAGCGACC ATAGTTTTAA TTTCTTTCAT ATTAGATGCT ACTATCTAAG TACGATGCTA AAGTTATAGT CCATCGCAAA AGGTTTTCAA CTGCCGCATG CAGAATGGGG TGACTTTGTG AAATACAAAG CGCAATGCAC CCATTTGTAA ATGCATGACT AGAATAGAAA GAAGTTAATA TTCACGAATA ATTTTGGTCT AATATCATC |
CDS |
| >Mp3g06900.1 ATGGAAACAA TGACCACGCG CTGCTCTTGG GCTGCTCCTC GGCATCCAAC TCGAGTTTGG GAAGTCCTCT TAATTGCAGT TATGACCTGC GTCTTCAGAA CTGCGCAAGT GGCAACTGCT CAAAATCCAT GGGAAGTAAC GGAGTTTACG AGGGGTGCTC GCGCTACATA TTACGGTGGA AACGACGCCT CCGGCACCTT AGGTGGTGCG TGCGGATATG GTAATCTCTT CGAAAATGGC TACGGGGTGG AGACGACGGC TCTGAGCACC GCGCTCTTCA ACGATGGGCT CACCTGCGGA GGCTGCTTTC AGATACAATG CATAGCTTCC GAGAGCGACT GGTGCCTGGC GAATGGAACC GTGAGCATCA CTGTCACCGC CACCAATTTC TGCCCCCCGG GATCCTTTGG AGGCTGGTGC GACCCTCCTC AGCCGCATTT CGACCTCTCC TACCCCATGT TCGCTACCCT CGCGCAGCCC GTCGGCGGAG TCATTCCCGT CCAGTACAGG AGGGTGTCGT GCTTGAAACA AGGAGGGGTG CGCTTCCAAA TCAACGGGAA TAATTGGTTC TTCCTGGTGC TGGTGATGAA TGTGGCGGGG GCCGGAGACG TGCAGGCAGT GGCGATTAAA GGGACGAGAT CCGAGTGGAT CTCCATGCAA CGAAACTGGG GTCAGAATTG GGCATCAGAC GGACCCCCAG AACTCGTCGG CCAAGCTCTG AGCTTCCGTG TCACTCTGGG ACTGACCAAA GAGACCTTGG ACTTTATCGA TGTGGCACCG GCAGATTGGC AGTTCGGGCA AACTTTCGAA GACGATTCAG GCCTCAACTT TAAATAA |
Protein |
| >Mp3g06900.1 METMTTRCSW AAPRHPTRVW EVLLIAVMTC VFRTAQVATA QNPWEVTEFT RGARATYYGG NDASGTLGGA CGYGNLFENG YGVETTALST ALFNDGLTCG GCFQIQCIAS ESDWCLANGT VSITVTATNF CPPGSFGGWC DPPQPHFDLS YPMFATLAQP VGGVIPVQYR RVSCLKQGGV RFQINGNNWF FLVLVMNVAG AGDVQAVAIK GTRSEWISMQ RNWGQNWASD GPPELVGQAL SFRVTLGLTK ETLDFIDVAP ADWQFGQTFE DDSGLNFK |