Mp3g08920
Description
Annotation
| Database | ID | Description |
|---|---|---|
| CDD | cd22274 | DPBB_EXPA_N |
| Pfam | PF01357 | Expansin C-terminal domain |
| SUPERFAMILY | SSF49590 | PHL pollen allergen |
| SUPERFAMILY | SSF50685 | Barwin-like endoglucanases |
| Gene3D | G3DSA:2.60.40.760 | - |
| ProSiteProfiles | PS50842 | Expansin, family-45 endoglucanase-like domain profile. |
| PANTHER | PTHR31867 | EXPANSIN-A15 |
| PRINTS | PR01226 | Expansin signature |
| SMART | SM00837 | dpbb_1 |
| Gene3D | G3DSA:2.40.40.10 | - |
| Pfam | PF03330 | Lytic transglycolase |
| PRINTS | PR01225 | Expansin/Lol pI family signature |
| ProSiteProfiles | PS50843 | Expansin, Cellulose-binding-like domain profile. |
| KEGG | K20628 | expansin |
| MapolyID | Mapoly0105s0025 | - |
| GO | GO:0005576 | extracellular region |
| GO | GO:0009664 | plant-type cell wall organization |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpExpansin18 | Cell wall related protein | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g08920 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g08920.1 TCCTGGGAGT CGTGAGGGCA AACGAGCCTT GAGTGAGGAT TGGGAGGTCT GAGCAGTGCT CCTGACCTCG ACTTCGACTG ATGGGATCGT CTGATACGTG GCATGGGGTC ACCTCCAATT TCTACAGTCT GGCTGAAAGC AGGTCCAAGC CTCCGTGTTA GAATTGCTTT CTGAGAGAAT GGCAAGTGAT GCGATAAAGT GAGGGAGTGA GTAAATCAGT CAGTCAGACT GTAAAGGCAG CCGCATATAT TAGGCTGACA GAGGAGTACA ATGCAGAAAG CATCAGTCTG AGACGGAGGT CGCGTTTGTC CTGCATCCTA CAACAGCAGC ACGTACAAGC TCGAGTTTTC GCGTCCCGCA CTTGAAGTGC TTGTACTCGA AGGGAAAAGT TTAATCGACT TCTGAGTGCT AGCAGTATCT GCCAGCTCGT GCTTCTGATA CACGCATGTA ATACAACATC GGCCGCCATG AGGACAATGA TATTGAACAG CACGACGTTT CTCATCAGCT TCATGCTCTT GTGTAGACAA TCAGTCGATT GTATACCAGC GACTGCCACA TTCTACGGTG GGAACGATGC TTCAGGCACA AATAGTATGT CCCTTCAAAC TCTGAATCCT GTGAATTATC GGGCATACGA TGAAAACGTA TGACGCTGTG TCAAGGCCTA CTTGAGACTA CTAGTTAAAC TCAGTAGTAG AAGCGATGCA TCAATCACGC ATCATAGCCT GAGAGAGCAA GCTCCTAATT GTCAATCTAC TGTTCTATCT CTGATCTCTT GCTTGTACAG CTGGTGCGTG CGCATATCCA AACGTGCTGG CGATGGGCTA CGGGACGATG AACGCTGCTC TGAGTTCTGC AATCTTCGAC CACGGCAAAA CATGTGGAGC TTGCTTCCAG CTCGTGTGCA CCTACGTGCC CTACGGCAAC CTTCGCTGCC TGCGCGGAAG AATCACGGTG ACTGCAACGA ACTATTGTCC GCAGGGAAGC AAGGGAGGAT GGTGCGACGC GCCCAGATCC CACTTCGACC TTGCGGAGCC GGCCTTCGTG CAGATCGCCC CTTACAATGC CGGCGTTGTG CACGTCGACT ATCAGCGCGT GAACTGCCAG AGGAGCGGCG AAATTCGGTA TCGCCTCTAC GGCTTCACTT ATTTCCTGCA GGTCCTGGTT TACAACGTGG CGGGCACGGG CGACGTCACG GCGATGTCCA TCAAAGGCTC GTCTGAGGGT CGGTGGATCT CCATGACTCG GAGCTGGGGT CAGTTGTGGA CCACGGGAGT CGTGCTCGAG CACCAGGCTC TCTCGTTCAT GGTCACCATC AGCGATGGGA GAACTATTAC CGTCAACGAC GTGGCCAACG AGTACTGGAG GTATGGACAG ACTTACGAAG GAGGACAGTT TTGAGCTCCT TTGCCCTCCG TGCCGAGCAT TCGAAGCCCA GGCTCCCGAC GGCATTTATA CCATGGAGTG CTTTGAAATG AGGCATTTCC TTGAGGAGTA GTTCACTTCA GCCCAGGATC GAGTTTTTCA GATGTTTCAC GTCCCCATTC ACCCTCTGAG TGATGCCCAT AATCTTATTC TAGATGTTAG CCTCCTACGG GTAGACAGCA GAAGCAGTAT GGTGAAAATT GGTTTCTGGC TCAGATCCGC CGCAAGAAAC CTGCTCAGCG GTAGGTAACT CGAGTATGCA CAAGATGACT CTCAGGATAC TTCTTGCAGG CCCGACCGTC GTGCATTCTA GTCATTCGTA GCCAGCTGGT GGAAATCATC GCCACTACAT ATGATTGATC AAGGCCAGGT TTGTGTCATG AGCCTCTGAG TTCTCTTTGA TACTCGCATC GTCCTTGCTC GATCGATGGC TGTAACCAGG AGCTTGTCAT ATCCAGGGAT ACTGACATCT TTCACGAACT TGCGCACTTT TCAATGCCCG TCTGCTTGTG CTGCGTTGCG CTGATCTCAG ACACGCACAC CTTTCTCGCA ACGCAGAGAC ACTCGACATT GAAGAGAAGT GTATCGATAA CATAACGACA GAGTATCGTC CAAAGATCTG TATAAAGTGG T |
mRNA UTR + CDS |
| >Mp3g08920.1 TCCTGGGAGT CGTGAGGGCA AACGAGCCTT GAGTGAGGAT TGGGAGGTCT GAGCAGTGCT CCTGACCTCG ACTTCGACTG ATGGGATCGT CTGATACGTG GCATGGGGTC ACCTCCAATT TCTACAGTCT GGCTGAAAGC AGGTCCAAGC CTCCGTGTTA GAATTGCTTT CTGAGAGAAT GGCAAGTGAT GCGATAAAGT GAGGGAGTGA GTAAATCAGT CAGTCAGACT GTAAAGGCAG CCGCATATAT TAGGCTGACA GAGGAGTACA ATGCAGAAAG CATCAGTCTG AGACGGAGGT CGCGTTTGTC CTGCATCCTA CAACAGCAGC ACGTACAAGC TCGAGTTTTC GCGTCCCGCA CTTGAAGTGC TTGTACTCGA AGGGAAAAGT TTAATCGACT TCTGAGTGCT AGCAGTATCT GCCAGCTCGT GCTTCTGATA CACGCATGTA ATACAACATC GGCCGCCATG AGGACAATGA TATTGAACAG CACGACGTTT CTCATCAGCT TCATGCTCTT GTGTAGACAA TCAGTCGATT GTATACCAGC GACTGCCACA TTCTACGGTG GGAACGATGC TTCAGGCACA AATACTGGTG CGTGCGCATA TCCAAACGTG CTGGCGATGG GCTACGGGAC GATGAACGCT GCTCTGAGTT CTGCAATCTT CGACCACGGC AAAACATGTG GAGCTTGCTT CCAGCTCGTG TGCACCTACG TGCCCTACGG CAACCTTCGC TGCCTGCGCG GAAGAATCAC GGTGACTGCA ACGAACTATT GTCCGCAGGG AAGCAAGGGA GGATGGTGCG ACGCGCCCAG ATCCCACTTC GACCTTGCGG AGCCGGCCTT CGTGCAGATC GCCCCTTACA ATGCCGGCGT TGTGCACGTC GACTATCAGC GCGTGAACTG CCAGAGGAGC GGCGAAATTC GGTATCGCCT CTACGGCTTC ACTTATTTCC TGCAGGTCCT GGTTTACAAC GTGGCGGGCA CGGGCGACGT CACGGCGATG TCCATCAAAG GCTCGTCTGA GGGTCGGTGG ATCTCCATGA CTCGGAGCTG GGGTCAGTTG TGGACCACGG GAGTCGTGCT CGAGCACCAG GCTCTCTCGT TCATGGTCAC CATCAGCGAT GGGAGAACTA TTACCGTCAA CGACGTGGCC AACGAGTACT GGAGGTATGG ACAGACTTAC GAAGGAGGAC AGTTTTGAGC TCCTTTGCCC TCCGTGCCGA GCATTCGAAG CCCAGGCTCC CGACGGCATT TATACCATGG AGTGCTTTGA AATGAGGCAT TTCCTTGAGG AGTAGTTCAC TTCAGCCCAG GATCGAGTTT TTCAGATGTT TCACGTCCCC ATTCACCCTC TGAGTGATGC CCATAATCTT ATTCTAGATG TTAGCCTCCT ACGGGTAGAC AGCAGAAGCA GTATGGTGAA AATTGGTTTC TGGCTCAGAT CCGCCGCAAG AAACCTGCTC AGCGGTAGGT AACTCGAGTA TGCACAAGAT GACTCTCAGG ATACTTCTTG CAGGCCCGAC CGTCGTGCAT TCTAGTCATT CGTAGCCAGC TGGTGGAAAT CATCGCCACT ACATATGATT GATCAAGGCC AGGTTTGTGT CATGAGCCTC TGAGTTCTCT TTGATACTCG CATCGTCCTT GCTCGATCGA TGGCTGTAAC CAGGAGCTTG TCATATCCAG GGATACTGAC ATCTTTCACG AACTTGCGCA CTTTTCAATG CCCGTCTGCT TGTGCTGCGT TGCGCTGATC TCAGACACGC ACACCTTTCT CGCAACGCAG AGACACTCGA CATTGAAGAG AAGTGTATCG ATAACATAAC GACAGAGTAT CGTCCAAAGA TCTGTATAAA GTGGT |
CDS |
| >Mp3g08920.1 ATGAGGACAA TGATATTGAA CAGCACGACG TTTCTCATCA GCTTCATGCT CTTGTGTAGA CAATCAGTCG ATTGTATACC AGCGACTGCC ACATTCTACG GTGGGAACGA TGCTTCAGGC ACAAATACTG GTGCGTGCGC ATATCCAAAC GTGCTGGCGA TGGGCTACGG GACGATGAAC GCTGCTCTGA GTTCTGCAAT CTTCGACCAC GGCAAAACAT GTGGAGCTTG CTTCCAGCTC GTGTGCACCT ACGTGCCCTA CGGCAACCTT CGCTGCCTGC GCGGAAGAAT CACGGTGACT GCAACGAACT ATTGTCCGCA GGGAAGCAAG GGAGGATGGT GCGACGCGCC CAGATCCCAC TTCGACCTTG CGGAGCCGGC CTTCGTGCAG ATCGCCCCTT ACAATGCCGG CGTTGTGCAC GTCGACTATC AGCGCGTGAA CTGCCAGAGG AGCGGCGAAA TTCGGTATCG CCTCTACGGC TTCACTTATT TCCTGCAGGT CCTGGTTTAC AACGTGGCGG GCACGGGCGA CGTCACGGCG ATGTCCATCA AAGGCTCGTC TGAGGGTCGG TGGATCTCCA TGACTCGGAG CTGGGGTCAG TTGTGGACCA CGGGAGTCGT GCTCGAGCAC CAGGCTCTCT CGTTCATGGT CACCATCAGC GATGGGAGAA CTATTACCGT CAACGACGTG GCCAACGAGT ACTGGAGGTA TGGACAGACT TACGAAGGAG GACAGTTTTG A |
Protein |
| >Mp3g08920.1 MRTMILNSTT FLISFMLLCR QSVDCIPATA TFYGGNDASG TNTGACAYPN VLAMGYGTMN AALSSAIFDH GKTCGACFQL VCTYVPYGNL RCLRGRITVT ATNYCPQGSK GGWCDAPRSH FDLAEPAFVQ IAPYNAGVVH VDYQRVNCQR SGEIRYRLYG FTYFLQVLVY NVAGTGDVTA MSIKGSSEGR WISMTRSWGQ LWTTGVVLEH QALSFMVTIS DGRTITVNDV ANEYWRYGQT YEGGQF |