Mp3g11830



Description

Annotation

Database ID Description
CDD cd03249 ABC_MTABC3_MDL1_MDL2
CDD cd18577 ABC_6TM_Pgp_ABCB1_D1_like
CDD cd18578 ABC_6TM_Pgp_ABCB1_D2_like
FunFam G3DSA:1.20.1560.10:FF:000009 ABC transporter B family member 1
FunFam G3DSA:1.20.1560.10:FF:000029 ABC transporter B family member 1
FunFam G3DSA:3.40.50.300:FF:000066 ABC transporter B family member 1
FunFam G3DSA:3.40.50.300:FF:000251 ABC transporter B family member 19
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain
Gene3D G3DSA:3.40.50.300 -
KEGG K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]
KEGG K17907 autophagy-related protein 9
KOG KOG0055 Multidrug/pheromone exporter, ABC superfamily; [Q]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR24222 ABC TRANSPORTER B FAMILY
Pfam PF00005 ABC transporter
Pfam PF00664 ABC transporter transmembrane region
ProSitePatterns PS00211 ABC transporters family signature.
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile.
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile.
SMART SM00382 AAA_5
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF90123 ABC transporter transmembrane region
GO GO:0055085 transmembrane transport
GO GO:0042626 ATPase-coupled transmembrane transporter activity
GO GO:0140359 ABC-type transporter activity
GO GO:0005524 ATP binding
GO GO:0005887 plasma membrane
GO GO:0016887 ATP hydrolysis activity
GO GO:0016020 membrane
MapolyID Mapoly0037s0014 -

Nomenclature

Gene symbol Product Transcript ID Status
MpABCB3 Auxin transport Published

Associated Literature (AI-based literature mining)

Auxin transport; Genome paper MpABCB1: Mapoly0075s0053 MpABCB2: Mapoly0075s0052 MpABCB3: Mapoly0037s0014 MpABCB4: Mapoly0182s0009 MpABCB5: Mapoly0115s0036 (from nomenclature)

0 core 1 peripheral

Lagercrantz, U., et al. (2022) · PLoS ONE  research experimental tool
Auxin-transport marker assayed by qRT-PCR; shows increased expression in mutants, supporting altered auxin homeostasis.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g11830.1 chr3:12238160..12245299 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g11830 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g11830 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.