Mp3g13150



Description

Annotation

Database ID Description
Gene3D G3DSA:1.50.10.130 -
Coils Coil Coil
Pfam PF03936 Terpene synthase family, metal binding domain
SUPERFAMILY SSF48239 Terpenoid cyclases/Protein prenyltransferases
PANTHER PTHR31739 ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC
MobiDBLite mobidb-lite consensus disorder prediction
SFLD SFLDG01014 Terpene Cyclase Like 1 N-term
Gene3D G3DSA:1.50.10.160 -
SUPERFAMILY SSF48576 Terpenoid synthases
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase
MapolyID Mapoly0050s0107 -
GO GO:0000287 magnesium ion binding
GO GO:0016829 lyase activity
GO GO:0010333 terpene synthase activity
GO GO:0016102 diterpenoid biosynthetic process

Nomenclature

Gene symbol Product Transcript ID Status
MpTPS6 Secondary metabolism enzyme, Terpene biosynthesis enzymes Provisional

Associated Literature (AI-based literature mining, Beta-version)

Secondary metabolism enzyme, Terpene biosynthesis enzymes (from nomenclature)

0 core 2 peripheral

Sun, R., et al. (2023) · Plant Cell  research experimental background
DEG: expression encoding a cis-kolavenol-producing enzyme was significantly decreased in Mp_cps-4ld.
Jibran, R., et al. (2024b) · Frontiers in Plant Science  research experimental background
Terpene synthase (Mp3g13150); up DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g13150.1 chr3:13662079..13668240 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g13150 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g13150 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.