Mp3g17260



Description

Annotation

Database ID Description
Gene3D G3DSA:4.10.280.10 -
PANTHER PTHR45844 TRANSCRIPTION FACTOR BHLH30
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
Pfam PF00010 Helix-loop-helix DNA-binding domain
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
SMART SM00353 finulus
MapolyID Mapoly0039s0068 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0046983 protein dimerization activity

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH7 transcription factor, bHLH Published
MpTMO5 transcription factor, bHLH Provisional

Associated Literature (AI-based literature mining, Beta-version)

TARGET OF MONOPTEROS5 bHLH; with MpLHW forms a heterodimer whose inducible (GR) overexpression alters cell proliferation, showing redeployment of an ancient regulator in vascular-plant evolution.

1 core 1 peripheral

Lu, K.-J., et al. (2019a) · Proceedings of the National Academy of Sciences USA  research experimental subject
TARGET OF MONOPTEROS5 bHLH; with MpLHW forms a heterodimer whose inducible (GR) overexpression alters cell proliferation, showing redeployment of an ancient regulator in vascular-plant evolution.
Romani, F., et al. (2021) · New Phytologist  research citation background
Review: MpTMO5/MpLHW heterodimerization is an ancient feature; Marchantia mutants lack the vascular phenotype.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g17260.1 chr3:18235374..18241033 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g17260 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g17260 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.