Mp3g17820



Description

Annotation

Database ID Description
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
Pfam PF00646 F-box domain
PANTHER PTHR13382 MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
SUPERFAMILY SSF52047 RNI-like
SMART SM00367 LRR_CC_2
SUPERFAMILY SSF81383 F-box domain
KOG KOG4341 F-box protein containing LRR; N-term missing; C-term missing; [R]
KOG KOG1947 Leucine rich repeat proteins, some proteins contain F-box; N-term missing; C-term missing; [R]
KOG KOG1947 Leucine rich repeat proteins, some proteins contain F-box; N-term missing; [R]
MapolyID Mapoly0039s0014 -
GO GO:0005737 cytoplasm
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpFBL17 F-BOX Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp3g17820.1 chr3:18957978..18963930 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g17820.2 chr3:18957671..18963963 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g17820 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g17820 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.