Mp3g21110
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like |
| Gene3D | G3DSA:2.160.20.10 | - |
| MapolyID | Mapoly0160s0006 | - |
| GO | GO:0004650 | polygalacturonase activity |
| GO | GO:0005975 | carbohydrate metabolic process |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpGH28.2 | Cell wall related protein | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g21110 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g21110.1 GTTGTTCTAG TATCTCCCGC AATATGAAGC TCTCACACGC ACGCCTCGCT TTCCTGTTCC TCGCTTTCCT GTTACTCTCG ATAGCTTTGA TAATCTCCAC TGTTGTTGTA AGTCGGTATC TGAATTTCAA CAGTGGAATT GCTCCACGTA CCGGTTCCGG GAGAGTTTTT AGGCCATGTT CATTTTCACG CAAAGTTCTA TGTGAGATTA AACCTGTCAA CAACATTCCT AAATCTTCTT CGGTAAGAAT CTAGTCGGGT CTGAAGAAAA TTTGCTTTTC AGTTAGGTTG AATTTTCTCC TTTCTCATTC ACTACATTTG ATCAATGTTT TTTACAGTAT CACACTCACA CTGTTTCCGG ATCGCCAACC CCGGAACCAG CTTGCACAAG GAAGCTCCTG TGCCAAACCA TGGGGGAACC ACGGCCCCTA GAACAAACTT TGCCGAATTT GGGAAGAAAG ATACTCAGTC TTCGTCCCAG AGGTTACAAT CTTGCTCTTG AATGGCCAGC CCACAGCAAG ATTCCACTTA AGATGATGGA GATAATCCCT TTCCTCCGTC GTCAGCTCCG CAAGTATATG GTGAGTCTTG TGGCTCAACA GGATCCTCCG ACTCTGGAGA ATCTCTATCG CCGTGGAAGA TTTCAGTTTA TACACGGGAC CCTGCTGATC ATGGGTGTGC TGTACCGACT CTTCCGCCGG TGGGAAGCTC GCTCGGGGTC GAATAGCGAC AACAAGGGGA GAAGAAACGT CATATATCGA CTCATGGTAA GGGCCAGTCG CATCTCAGTC CCTCGTCTGT GTTGGTTCGT ACCCGGCCAC TCAGTCTCTT ATACAGTACT GACCCTTAGC TTCTGATATC GCAGTCAGAT ATGACTTCCC TCGTTGCAGA AGAAGTCAAA GGTGTTGTTG AATACTATTC AGACTTCCGA GTCGACCCTC CGGAGGAGTT TTCTCTGACC GTGCGACCAA AGCTTGTCCC TGAGCTCTTG CAAGCGTACG TTCCATCAGC CATAAGGAAT TTTTTTCTGT ATTTACTTCA CTGAACCTTA TTCAACATTT ATCTATATTT CGTTTCTCAA TCGAACTTGT GCGACGCAGG TCTCGGGGTA TGATTTTCAG CACTGATGGA CCTCCTCGTG CTCTTCTCCT CTATCATCCC ACTGCACTCA GCTGTAAGTC ATCCTGGAAC TACTGTATCC GAGGTTTTAG TAGTGATTAA GATGCAGTCA TGGTGTGCTC TACTGTGAGC GAGTATGAGA TCATAAAGCA ACGTTGCCTT TTAGCAAATG TTCTACATGA ACTCCGAGAC CCATGACTTT TTAATGTAAG TGCAGTGATA TCAACAAACT TGGAGGGAGG ATTTGCAAGT CAACCTTTCC GGTGCGTATA CATTGGAATA TATTCATCAA TGTCGACGAC GGAAATTCCA GGTTCCTTGG AACCACATCG GAAGAATTTA CTCAAATGGA TTTCGTCTCG TGAAGGATGT ATTATCCACC CTTCTGGGTT CATGGTGAGG GATAATCTGA CCACGCTCTT GTATCTCTCA ATCCAGTATT TAGCCAATTT CTGGGGAAGG TTGCTATTTG CTAACAGTGA GAAATGGTTT CATCCTATTT GAAGAACTCC AAGTAGTAAT TCGTATTCAG TGTATCGGAG ATGGTGTAAC AACTAGATGA AATTCACTAA TGTCAAACAT ACTTGGTGAA AATGTTATTG ACAATATGCA GATTTCTTCC TTTGCGTGGC GGCTTGGTGC ATGCACACAT GCTGGTGGTG GTGGTGTGAC AGTCGTTCAA ACTGCATTAC AAATCACCCA GATCGCCCAC GTTGTAGTGA AGGAGGTGAC CATCCAAAAT GCTGCGCAAA TACATTTCGA GACCTGTTTA CGAGTGGTCG TGAAAGAAGT GAAGGTGACA GCTCCAGAAG ATAGCCCCAA CACAGATGGT ATAAGCTTGG CCGATGCTCA GAAGGCCACT GTCGAGTATT CCGTTCTGTC GTTCACACTA CTCGTGACGT GTTACAATTT GGCCTCCTTA GATTTCGAAT CGCGACCTGT CGCGTCTCCC AGGGCGACAG CTCGTGGTCA TGTGCGACCG ATTCTGGAGA CCGTAGGAGC CATTCTCCGA TTTCGTCCAG ACTTGGAGAT GCTAGGGACC GAGGTGTTCG ATCGTATGAA AACCAGGTTT ATGTCCGAAA TTTAGAAGAA TCTTGATGAT GAGGAGATGA GACAAGTTGC CCACCTTGGA GTCTAGGTAT GGTGAGTGCA CTGGTATTTA CGGATTGGGT CAGGGTCTAG TACTTGAAAC CAACGTGAAA ACTTTCGTAC ATTATTGTGC CTCTCTAGAC AATGTTCTCT GCTAAGCAAA CCCCAGTCTT TCTTTCTGTT GGATGATCCT GGCAAAGAAT TATGGACCCA TGTATAGGTG CATCGCTGTT TTCATTGCGT CCTGCTGCAA AAGTTGCTAC GGGGATTAGT CCCTCATAAT TTTGTAAACA TTTGACCCTT ATAAAGCTTT CCCCACTCTT TTTTGTTGTC |
mRNA UTR + CDS |
| >Mp3g21110.1 GTTGTTCTAG TATCTCCCGC AATATGAAGC TCTCACACGC ACGCCTCGCT TTCCTGTTCC TCGCTTTCCT GTTACTCTCG ATAGCTTTGA TAATCTCCAC TGTTGTTGTA AGTCGGTATC TGAATTTCAA CAGTGGAATT GCTCCACGTA CCGGTTCCGG GAGAGTTTTT AGGCCATGTT CATTTTCACG CAAAGTTCTA TGTGAGATTA AACCTGTCAA CAACATTCCT AAATCTTCTT CGTATCACAC TCACACTGTT TCCGGATCGC CAACCCCGGA ACCAGCTTGC ACAAGGAAGC TCCTGTGCCA AACCATGGGG GAACCACGGC CCCTAGAACA AACTTTGCCG AATTTGGGAA GAAAGATACT CAGTCTTCGT CCCAGAGGTT ACAATCTTGC TCTTGAATGG CCAGCCCACA GCAAGATTCC ACTTAAGATG ATGGAGATAA TCCCTTTCCT CCGTCGTCAG CTCCGCAAGT ATATGGTGAG TCTTGTGGCT CAACAGGATC CTCCGACTCT GGAGAATCTC TATCGCCGTG GAAGATTTCA GTTTATACAC GGGACCCTGC TGATCATGGG TGTGCTGTAC CGACTCTTCC GCCGGTGGGA AGCTCGCTCG GGGTCGAATA GCGACAACAA GGGGAGAAGA AACGTCATAT ATCGACTCAT GTCAGATATG ACTTCCCTCG TTGCAGAAGA AGTCAAAGGT GTTGTTGAAT ACTATTCAGA CTTCCGAGTC GACCCTCCGG AGGAGTTTTC TCTGACCGTG CGACCAAAGC TTGTCCCTGA GCTCTTGCAA GCGTCTCGGG GTATGATTTT CAGCACTGAT GGACCTCCTC GTGCTCTTCT CCTCTATCAT CCCACTGCAC TCAGCTTGAT ATCAACAAAC TTGGAGGGAG GATTTGCAAG TCAACCTTTC CGGTGCGTAT ACATTGGAAT ATATTCATCA ATGTCGACGA CGGAAATTCC AGGTTCCTTG GAACCACATC GGAAGAATTT ACTCAAATGG ATTTCGTCTC GTGAAGGATG TATTATCCAC CCTTCTGGGT TCATGATTTC TTCCTTTGCG TGGCGGCTTG GTGCATGCAC ACATGCTGGT GGTGGTGGTG TGACAGTCGT TCAAACTGCA TTACAAATCA CCCAGATCGC CCACGTTGTA GTGAAGGAGG TGACCATCCA AAATGCTGCG CAAATACATT TCGAGACCTG TTTACGAGTG GTCGTGAAAG AAGTGAAGGT GACAGCTCCA GAAGATAGCC CCAACACAGA TGGTATAAGC TTGGCCGATG CTCAGAAGGC CACTGTCGAG TATTCCGTTC TGTCGTTCAC ACTACTCGTG ACGTGTTACA ATTTGGCCTC CTTAGATTTC GAATCGCGAC CTGTCGCGTC TCCCAGGGCG ACAGCTCGTG GTCATGTGCG ACCGATTCTG GAGACCGTAG GAGCCATTCT CCGATTTCGT CCAGACTTGG AGATGCTAGG GACCGAGGTG TTCGATCGTA TGAAAACCAG GTTTATGTCC GAAATTTAGA AGAATCTTGA TGATGAGGAG ATGAGACAAG TTGCCCACCT TGGAGTCTAG GTATGGTGAG TGCACTGGTA TTTACGGATT GGGTCAGGGT CTAGTACTTG AAACCAACGT GAAAACTTTC GTACATTATT GTGCCTCTCT AGACAATGTT CTCTGCTAAG CAAACCCCAG TCTTTCTTTC TGTTGGATGA TCCTGGCAAA GAATTATGGA CCCATGTATA GGTGCATCGC TGTTTTCATT GCGTCCTGCT GCAAAAGTTG CTACGGGGAT TAGTCCCTCA TAATTTTGTA AACATTTGAC CCTTATAAAG CTTTCCCCAC TCTTTTTTGT TGTC |
CDS |
| >Mp3g21110.1 ATGAAGCTCT CACACGCACG CCTCGCTTTC CTGTTCCTCG CTTTCCTGTT ACTCTCGATA GCTTTGATAA TCTCCACTGT TGTTGTAAGT CGGTATCTGA ATTTCAACAG TGGAATTGCT CCACGTACCG GTTCCGGGAG AGTTTTTAGG CCATGTTCAT TTTCACGCAA AGTTCTATGT GAGATTAAAC CTGTCAACAA CATTCCTAAA TCTTCTTCGT ATCACACTCA CACTGTTTCC GGATCGCCAA CCCCGGAACC AGCTTGCACA AGGAAGCTCC TGTGCCAAAC CATGGGGGAA CCACGGCCCC TAGAACAAAC TTTGCCGAAT TTGGGAAGAA AGATACTCAG TCTTCGTCCC AGAGGTTACA ATCTTGCTCT TGAATGGCCA GCCCACAGCA AGATTCCACT TAAGATGATG GAGATAATCC CTTTCCTCCG TCGTCAGCTC CGCAAGTATA TGGTGAGTCT TGTGGCTCAA CAGGATCCTC CGACTCTGGA GAATCTCTAT CGCCGTGGAA GATTTCAGTT TATACACGGG ACCCTGCTGA TCATGGGTGT GCTGTACCGA CTCTTCCGCC GGTGGGAAGC TCGCTCGGGG TCGAATAGCG ACAACAAGGG GAGAAGAAAC GTCATATATC GACTCATGTC AGATATGACT TCCCTCGTTG CAGAAGAAGT CAAAGGTGTT GTTGAATACT ATTCAGACTT CCGAGTCGAC CCTCCGGAGG AGTTTTCTCT GACCGTGCGA CCAAAGCTTG TCCCTGAGCT CTTGCAAGCG TCTCGGGGTA TGATTTTCAG CACTGATGGA CCTCCTCGTG CTCTTCTCCT CTATCATCCC ACTGCACTCA GCTTGATATC AACAAACTTG GAGGGAGGAT TTGCAAGTCA ACCTTTCCGG TGCGTATACA TTGGAATATA TTCATCAATG TCGACGACGG AAATTCCAGG TTCCTTGGAA CCACATCGGA AGAATTTACT CAAATGGATT TCGTCTCGTG AAGGATGTAT TATCCACCCT TCTGGGTTCA TGATTTCTTC CTTTGCGTGG CGGCTTGGTG CATGCACACA TGCTGGTGGT GGTGGTGTGA CAGTCGTTCA AACTGCATTA CAAATCACCC AGATCGCCCA CGTTGTAGTG AAGGAGGTGA CCATCCAAAA TGCTGCGCAA ATACATTTCG AGACCTGTTT ACGAGTGGTC GTGAAAGAAG TGAAGGTGAC AGCTCCAGAA GATAGCCCCA ACACAGATGG TATAAGCTTG GCCGATGCTC AGAAGGCCAC TGTCGAGTAT TCCGTTCTGT CGTTCACACT ACTCGTGACG TGTTACAATT TGGCCTCCTT AGATTTCGAA TCGCGACCTG TCGCGTCTCC CAGGGCGACA GCTCGTGGTC ATGTGCGACC GATTCTGGAG ACCGTAGGAG CCATTCTCCG ATTTCGTCCA GACTTGGAGA TGCTAGGGAC CGAGGTGTTC GATCGTATGA AAACCAGGTT TATGTCCGAA ATTTAG |
Protein |
| >Mp3g21110.1 MKLSHARLAF LFLAFLLLSI ALIISTVVVS RYLNFNSGIA PRTGSGRVFR PCSFSRKVLC EIKPVNNIPK SSSYHTHTVS GSPTPEPACT RKLLCQTMGE PRPLEQTLPN LGRKILSLRP RGYNLALEWP AHSKIPLKMM EIIPFLRRQL RKYMVSLVAQ QDPPTLENLY RRGRFQFIHG TLLIMGVLYR LFRRWEARSG SNSDNKGRRN VIYRLMSDMT SLVAEEVKGV VEYYSDFRVD PPEEFSLTVR PKLVPELLQA SRGMIFSTDG PPRALLLYHP TALSLISTNL EGGFASQPFR CVYIGIYSSM STTEIPGSLE PHRKNLLKWI SSREGCIIHP SGFMISSFAW RLGACTHAGG GGVTVVQTAL QITQIAHVVV KEVTIQNAAQ IHFETCLRVV VKEVKVTAPE DSPNTDGISL ADAQKATVEY SVLSFTLLVT CYNLASLDFE SRPVASPRAT ARGHVRPILE TVGAILRFRP DLEMLGTEVF DRMKTRFMSE I |