Mp4g01910



Description

Annotation

Database ID Description
NCBIfam TIGR01559 squalene synthase
Pfam PF00494 Squalene/phytoene synthase
PANTHER PTHR11626 FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE
FunFam G3DSA:1.10.600.10:FF:000012 Squalene synthase 1
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase
ProSitePatterns PS01044 Squalene and phytoene synthases signature 1.
ProSitePatterns PS01045 Squalene and phytoene synthases signature 2.
SFLD SFLDG01018 Squalene/Phytoene Synthase Like
CDD cd00683 Trans_IPPS_HH
SUPERFAMILY SSF48576 Terpenoid synthases
SFLD SFLDS00005 Isoprenoid Synthase Type I
KEGG K00801 farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
KOG KOG1459 Squalene synthetase; [I]
MapolyID Mapoly0098s0008 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSQS3 Secondary metabolism enzyme, Terpene biosynthesis enzymes Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g01910.1 chr4:2393383..2399636 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.