Mp4g01910



Description

Annotation

Database ID Description
NCBIfam TIGR01559 squalene synthase
Pfam PF00494 Squalene/phytoene synthase
PANTHER PTHR11626 FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE
FunFam G3DSA:1.10.600.10:FF:000012 Squalene synthase 1
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase
ProSitePatterns PS01044 Squalene and phytoene synthases signature 1.
ProSitePatterns PS01045 Squalene and phytoene synthases signature 2.
SFLD SFLDG01018 Squalene/Phytoene Synthase Like
CDD cd00683 Trans_IPPS_HH
SUPERFAMILY SSF48576 Terpenoid synthases
SFLD SFLDS00005 Isoprenoid Synthase Type I
KEGG K00801 farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
KOG KOG1459 Squalene synthetase; [I]
MapolyID Mapoly0098s0008 -
GO GO:0005789 endoplasmic reticulum membrane
GO GO:0004310 obsolete farnesyl-diphosphate farnesyltransferase activity
GO GO:0009058 biosynthetic process
GO GO:0004311 farnesyltranstransferase activity
GO GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
GO GO:0008610 lipid biosynthetic process
GO GO:0045338 farnesyl diphosphate metabolic process
GO GO:0051996 squalene synthase [NAD(P)H] activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSQS3 Secondary metabolism enzyme, Terpene biosynthesis enzymes Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Associated Literature (AI-based literature mining, Beta-version)

Squalene synthase reported as broadly expressed and associated with sterol biosynthesis; its localization was examined in this study.

1 core 0 peripheral

Forestier ECF, Asprilla P, Bonter I, Romani F, Frangedakis E, Haseloff J. (2026) · Communications biology  research experimental subject
Squalene synthase reported as broadly expressed and associated with sterol biosynthesis; its localization was examined in this study.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g01910.1 chr4:2393383..2399636 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g01910 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g01910 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.