Mp4g03900



Description

Annotation

Database ID Description
PANTHER PTHR12131 ATP-DEPENDENT RNA AND DNA HELICASE
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.40.30.300 -
Coils Coil Coil
PIRSF PIRSF005198 SKI2
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
FunFam G3DSA:3.40.50.300:FF:000083 ATP-dependent RNA helicase DOB1
CDD cd18795 SF2_C_Ski2
Pfam PF21408 Exosome RNA helicase MTR4-like, stalk
Pfam PF08148 DSHCT (NUC185) domain
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00270 DEAD/DEAH box helicase
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SMART SM00487 ultradead3
FunFam G3DSA:1.10.3380.30:FF:000006 DExH-box ATP-dependent RNA helicase DExH10
CDD cd13154 KOW_Mtr4
Gene3D G3DSA:1.10.3380.30 -
CDD cd18024 DEXHc_Mtr4-like
SMART SM01142 DSHCT_2
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Pfam PF13234 Mtr4-like, beta-barrel domain
SMART SM00490 helicmild6
FunFam G3DSA:3.40.50.300:FF:000141 ATP-dependent RNA helicase DOB1
FunFam G3DSA:2.40.30.300:FF:000001 Mtr4 exosome RNA helicase
KEGG K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
KOG KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily; [A]
MapolyID Mapoly0044s0084 -
GO GO:0005634 nucleus
GO GO:0006401 RNA catabolic process
GO GO:0003723 RNA binding
GO GO:0005524 ATP binding
GO GO:0003724 RNA helicase activity
GO GO:0000460 maturation of 5.8S rRNA
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHEN2 DExH-box RNA helicase Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g03900.1 chr4:5251305..5266657 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g03900.2 chr4:5251305..5266657 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g03900 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g03900 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.