Mp4g04090



Description

Annotation

Database ID Description
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
PANTHER PTHR45752 LEUCINE-RICH REPEAT-CONTAINING
SMART SM00369 LRR_typ_2
SUPERFAMILY SSF52047 RNI-like
Gene3D G3DSA:1.10.8.430 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PRINTS PR00364 Disease resistance protein signature
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF52058 L domain-like
Pfam PF00931 NB-ARC domain
Pfam PF00560 Leucine Rich Repeat
KOG KOG4658 Apoptotic ATPase; [T]
KOG KOG0532 Leucine-rich repeat (LRR) protein, contains calponin homology domain; C-term missing; [Z]
MapolyID Mapoly0044s0064 -
GO GO:0007165 signal transduction
GO GO:0043531 ADP binding
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNBS-LRR8 NBS genes Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp4g04090.1 chr4:5396241..5402185 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g04090 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g04090 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.