Mp4g04850



Description

Annotation

Database ID Description
Gene3D G3DSA:1.25.10.10 -
ProSiteProfiles PS50181 F-box domain profile.
Pfam PF00514 Armadillo/beta-catenin-like repeat
ProSiteProfiles PS50176 Armadillo/plakoglobin ARM repeat profile.
PANTHER PTHR46976 PROTEIN ARABIDILLO 1
SMART SM00256 fbox_2
Pfam PF12937 F-box-like
CDD cd22155 F-box_AtADLO1-like
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
SUPERFAMILY SSF48371 ARM repeat
SMART SM00185 arm_5
SUPERFAMILY SSF52047 RNI-like
KOG KOG4224 Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting; [U]
KOG KOG2120 SCF ubiquitin ligase, Skp2 component; N-term missing; [O]
MapolyID Mapoly0150s0009 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpARABIDILLO1-2 F-BOX Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp4g04850.1 chr4:6538498..6546952 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g04850 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g04850 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.