Mp4g06900



Description

Annotation

Database ID Description
Coils Coil Coil
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile.
CDD cd10845 DSRM_RNAse_III_family
Gene3D G3DSA:3.40.50.1000 -
PANTHER PTHR23081 RNA POLYMERASE II CTD PHOSPHATASE
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF54768 dsRNA-binding domain-like
SMART SM00577 forpap2
FunFam G3DSA:3.40.50.1000:FF:000035 RNA polymerase II C-terminal domain phosphatase-like 1
ProSiteProfiles PS50969 FCP1 homology domain profile.
Gene3D G3DSA:3.30.160.20 -
Pfam PF03031 NLI interacting factor-like phosphatase
SMART SM00358 DRBM_3
Pfam PF00035 Double-stranded RNA binding motif
SUPERFAMILY SSF56784 HAD-like
KEGG K18998 RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16]
KOG KOG0323 TFIIF-interacting CTD phosphatases, including NLI-interacting factor; C-term missing; [K]
KOG KOG1817 Ribonuclease; N-term missing; [A]
KOG KOG3732 Staufen and related double-stranded-RNA-binding proteins; C-term missing; [UK]
MapolyID Mapoly0125s0035 -
GO GO:0070940 obsolete dephosphorylation of RNA polymerase II C-terminal domain
GO GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpCPL1 RNA polymerase II C-terminal domain phosphatase Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g06900.1 chr4:9207622..9218381 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g06900 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g06900 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.