Mp4g08270



Description

Annotation

Database ID Description
Pfam PF00931 NB-ARC domain
SUPERFAMILY SSF52058 L domain-like
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.40.50.300 -
Pfam PF13855 Leucine rich repeat
SUPERFAMILY SSF53474 alpha/beta-Hydrolases
PRINTS PR00364 Disease resistance protein signature
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
PANTHER PTHR48182 PROTEIN SERAC1
SMART SM00369 LRR_typ_2
KEGG K23504 protein SERAC1
KOG KOG0532 Leucine-rich repeat (LRR) protein, contains calponin homology domain; C-term missing; [Z]
KOG KOG2029 Uncharacterized conserved protein; N-term missing; [S]
MapolyID Mapoly0120s0019 -
GO GO:0043531 ADP binding
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNBS-LRR9 NBS genes Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp4g08270.1 chr4:10505065..10510214 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g08270 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g08270 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.