Mp4g08290



Description

Annotation

Database ID Description
SUPERFAMILY SSF52058 L domain-like
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR48182 PROTEIN SERAC1
Gene3D G3DSA:3.40.50.300 -
Pfam PF13855 Leucine rich repeat
Gene3D G3DSA:3.40.50.1820 alpha/beta hydrolase
SUPERFAMILY SSF53474 alpha/beta-Hydrolases
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
Pfam PF00931 NB-ARC domain
Gene3D G3DSA:1.10.8.430 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PRINTS PR00364 Disease resistance protein signature
SMART SM00369 LRR_typ_2
SMART SM00364 LRR_bac_2
KEGG K23504 protein SERAC1
KOG KOG4658 Apoptotic ATPase; [T]
KOG KOG2029 Uncharacterized conserved protein; N-term missing; [S]
KOG KOG1015 Transcription regulator XNP/ATRX, DEAD-box superfamily; C-term missing; [K]
MapolyID Mapoly0120s0017 -
GO GO:0043531 ADP binding
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNBS-LRR10 NBS genes Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp4g08290.1 chr4:10520788..10532068 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g08290 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g08290 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.