Mp4g15990



Description

Annotation

Database ID Description
FunFam G3DSA:2.130.10.10:FF:000182 DNA damage-binding protein 1a
Gene3D G3DSA:1.10.150.910 -
Gene3D G3DSA:2.130.10.10 -
FunFam G3DSA:2.130.10.10:FF:000267 DNA damage-binding protein 1a
Pfam PF10433 Mono-functional DNA-alkylating methyl methanesulfonate N-term
Coils Coil Coil
FunFam G3DSA:1.10.150.910:FF:000003 DNA damage-binding protein 1a
FunFam G3DSA:2.130.10.10:FF:000070 DNA damage-binding protein 1
Pfam PF03178 CPSF A subunit region
PANTHER PTHR10644 DNA REPAIR/RNA PROCESSING CPSF FAMILY
SUPERFAMILY SSF50998 Quinoprotein alcohol dehydrogenase-like
KEGG K10610 DNA damage-binding protein 1
KOG KOG1897 Damage-specific DNA binding complex, subunit DDB1; [L]
MapolyID Mapoly0054s0064 -
GO GO:0005634 nucleus
GO GO:0003676 nucleic acid binding
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpDDB1 A subunit of CDD complex Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g15990.1 chr4:21492049..21502031 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g15990 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g15990 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.