Mp4g19730



Description

Annotation

Database ID Description
SMART SM00581 testneu
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF04046 PSP
Coils Coil Coil
PANTHER PTHR13316 ZINC FINGER, CCHC DOMAIN CONTAINING 8
KEGG K13128 zinc finger CCHC domain-containing protein 8
KOG KOG2673 Uncharacterized conserved protein, contains PSP domain; C-term missing; [S]
MapolyID Mapoly0126s0021 -
GO GO:0034470 obsolete ncRNA processing
GO GO:0003723 RNA binding
GO GO:0071013 catalytic step 2 spliceosome

Nomenclature

Gene symbol Product Transcript ID Status
MpZCCHC8A ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 8 Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g19730.1 chr4:26607098..26613117 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g19730 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g19730 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.