Mp5g02420



Description

Annotation

Database ID Description
Gene3D G3DSA:2.60.120.650 Cupin
Pfam PF08007 JmjC domain
Gene3D G3DSA:1.25.10.10 -
PANTHER PTHR13096 MINA53 MYC INDUCED NUCLEAR ANTIGEN
SUPERFAMILY SSF51197 Clavaminate synthase-like
SUPERFAMILY SSF48371 ARM repeat
ProSiteProfiles PS51184 JmjC domain profile.
KOG KOG3706 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
KOG KOG4224 Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting; N-term missing; C-term missing; [U]
MapolyID Mapoly0147s0035 -
GO GO:0005730 nucleolus
GO GO:0032453 histone H3K4 demethylase activity
GO GO:0051864 histone H3K36 demethylase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpCupin77 Cupin Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g02420.1 chr5:3974122..3980096 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g02420.2 chr5:3974122..3980096 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g02420 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g02420 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.