Mp5g03900
Description
Annotation
| Database | ID | Description |
|---|---|---|
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. |
| Pfam | PF00400 | WD domain, G-beta repeat |
| SMART | SM00320 | WD40_4 |
| Gene3D | G3DSA:2.130.10.10 | - |
| PANTHER | PTHR19919 | WD REPEAT CONTAINING PROTEIN |
| FunFam | G3DSA:2.130.10.10:FF:000234 | WD repeat-containing protein LWD1 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. |
| KEGG | K11805 | DDB1- and CUL4-associated factor 7 |
| KOG | KOG0290 | Conserved WD40 repeat-containing protein AN11; [S] |
| MapolyID | Mapoly0259s0004 | - |
| GO | GO:0005634 | nucleus |
| GO | GO:0005515 | protein binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpWDR1 | WD40 repeat-containing protein | Published |
Associated Literature (AI-based literature mining, Beta-version)
TTG1-like WD40-repeat protein; MpWDR1 (or MpWDR2) complements flavonoid-pigmentation and epidermal defects, defining the WDR component of the MBW complex.
1 core 1 peripheral
Kongsted TE, Romani F, Airoldi CA, Haseloff J, Glover BJ. (2026)
· Current biology : CB research experimental subject
TTG1-like WD40-repeat protein; MpWDR1 (or MpWDR2) complements flavonoid-pigmentation and epidermal defects, defining the WDR component of the MBW complex.
Lagercrantz, U., et al. (2021)
· New Phytologist research experimental background
MpWDR1 WD-repeat clock-associated gene
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g03900 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g03900.1 GCGAGCTAGC GAGCGCGAGC GCCAGGGCCA GGGCGAACGC GAACGCGAAG GAGTGAGTGA ATGCATGTGG ACGAGGGCGG CCGAGCTCGC ACCAGGAAGA GCTGTAGAGC AATTTCGTCG CGCCGTGGCG ATTCGATTGC GATTGGAACA TGATCGTCGA GTCTCCGTGT ACGCAATTGC GATCTCATGC GGATTTGAGC GAGCTGAGCT CGAGCTTCCT CCGCGCCAAG TACCGGGCGA CGACGAGAAA TCGAGAAATC GAGACCACGG CGAGCACGAG CACGAGGACG AAGACGAGGA CAGGTCGCGG AAGCCAGAGC AGCAGCGAGA GATTTTGCTG CCTTTCTGTG GTGAGGCGTT TTGCTGAGAG AGGGAGGGCG AGGGCGAGGG CGAGGGCGAA GGCGAAGGAC GAGGAGCGTG AGTAGGGAGC CGACAGTTAT CAGACGGTCG CACCTCGTCG GTGAGCTTCG TCATGTTTCT TGTGTCCTCT GTGTGGGGTT TGTGCGTTTG TGGCTTTTCC CCCGTTCGAT GGGAAATTGA GTCTCGTGGG GAGGATTCTT TCGACTCAGG CGAGGTTGAC GAACATTGTG TGGTCAATTG AGTGTATGTT GGTGCCTTTG TCGTCCCCCA GGGTTCTTGC ACTGCGGGGT CCATGTCGAG TATGTCGCAG TCTTTGCTCG GAGTCCGTGT TTTATTGTCT TGTTCTAGGT CATCGATTGT GCACGGTCGT CTTTCTGAAT GTACTTCGTT GCTCGGTCAA TCAGCTCTAT CAGTTCGGCA TTTCGGTCGT TTCTTGTTGT AGCATAGACA CTCAGCGCTC GAGGCCTCTA GGTTGAGAAC GGATGGCGTA TCAGTGGCCG AACTGGCGTT ATAAATTTCG AAGAATTGGA ACTGGCGGCA GAGTGGATGA ATTTGTATGC AGCGCAAAAT TGGCGATGAT GGCCATCGTT TGAACTCTAT CCATCTGCGC AGTGGGAGTC TACATTGCGT TAGTGGTTTG TTCGGAAATC GTGCATTCGG GCCGTTCTGT TCGTCCGTCG TAGCTAATCG CTTGCCCCTG CTTTGGCCGT CGTCTGTGCC AATTTGAAAT ATAGGTCAGC GGTCTTGCCT GCAAGTTTGA CATCATGGCG AGCGAGAAGA AGGATGCCAA TTCCCAGAAT ACTCAGGATC AGCTCAAGCG AGCAGAAATT TACACTTACG AGGCACCGTG GCTTATTTAC GGCATGAATT GGAGTGTACA GAGGGAACAC AAGTTCCGTC TTGCCATTGG AAGTTTCATC GAGGAGTACT CGAACAAGGT GGAAATTGTG AGGCTTGATG ATGAGACGGG TAAGTTCAAT TCGGATCCGA AGCTTTCCTT CGAACACCCG TATCCCACGA CGAAAATAAT GTTCATCCCC GACAAGGAGA GCCAAAAGCC TGACCTCATG GCCACCACCG GAGACTATCT ACGCATCTGG CAGATCAATG AAGACAAGGT GGAGCTCAAG AGTCTTCTCA ACAACAACAA GAATAGCGAG TACTGCTCCC CGCTTACGTC GTTTGATTGG AATGAGACTG AGATGAGACG GCTGGGTACC TCCAGTATCG ATACAACCTG CACTATCTGG GACATAGAGA AGGAGGTGGT AGACACGCAA CTCATTGCTC ACGACAAGGC TGTATATGAT ATAGCTTGGG GAGGAGTAGG AGTGTTTGCT TCAGTGTCGG CCGATGGATC TGTGAGGGTG TTCGATCTGA GAGATAAAGA GCACTCTACG ATCATCTATG AGAATCCTCA ACCTGACACT CCTCTTCTTC GACTTGGGTG GAACAAACAA GACCCGCGCT ACATGGCGAC CATTGTCATG GACTCTGCGA AGGTCATTGT TTTGGACATT CGATTCCCCA CGCTGCCAGT GGCAGAGCTA CAACGCCATC AGGTGAGACG AGTGTATGTA GTGGCACGAT TTTTTCGAGT TCAAGTTGCA TGGGCTTCTG CTTTTGTCAT TTCTTTTTGC AAATGCCGTC CTGCATCTAC GCCGATCATT AAAGGAATTT TGACGCTACA AGTGGAGGAC AATTATCCCG CTCGTTCCTA TCACCCGTCT AGGTGGGGTT GGTGTCCAAA TCCTTCAATC TTCAATCTAG AAGTAATGAG CAAGCATATC AAATCGAGTG CTCACGTATG TTTTGTTGTA CAGGCTTGTG TAAATGCAGT AGCATGGGCT CCTCACAGCT CCTGCCACAT CTGCACAGCG GGTGATGATT CGCAGGCTTT GATCTGGGAC TTGTCCACTA TGAGCACACC CGTGGACGGA GGTCTCGACC CTATTCTTGC TTACACGGCA GGGGCTGAAA TCAATCAGCT TCAGTGGTCG TCTACGCAGC CGGACTGGGT GGCCATAGCA TTTTCCAACA AGTTGCAGAT TCTCAGGGTG TGAGGTTTTA AGTACTTCTC ACCAATTTTG GTGGACATCT GGGTGTGAAA TAATCGGGGC CTTGATGCAA GGGAAGAAGG GCGATTCACC CATTTGCGGG ACGATGGTGA TGACATCCTC CTTTGCATTC TCTATGCAGT GATGATTTTT AGTTTGGCGC TGTATCACAT CTCTGGATCG GATGGTCAAC TTTGAGCAGA TTCATTGGAA TGTGAGTACT CAGCAGAAGC ATTGTAACAG TACGTCGGAG GTTTCGTATT GGAGCCTAGA GAATTTAGTC GAATCTGGAG TAGTATACTG GACCTTCTCA TCTTTCCCCT AGGATCCCAG TCTGGGCAGG GGTTGGAGGC GTGGCCGATT CTAGCCTGCA GACCAGAGCA AACTTACACG ATCAATGTTC TGCATTATAC TATGGCTGGC CGACCATTGA TCTCTCATTG CGAACTGAAA GTATTTGTGT AGGAAACAGA GTCATGTACA TCTCGAATCC ATTGCCCATG GTTTGCTGCT GGTTGGATTA GTATCTGGAA GCGAAACTGC TCCTTCCGGC AAGGCCGTGT CGAATGTGCC TATTTTGTGG ATGCAAGGTA CCAGGATATG CACTATCGGA TACAGCTTTT GCTCTGACGG TCGAGATGAC ATGGATGACC TGAAGTGATC TGCCACAACA GCAGGTGCAT CTTTTGAGGT GGAGAGTCAC TCTTCGAGAG GATTTTCATA GTAATGGGTA TGGGAGTTGT AGATGACGCA TCAGCTTGCG TTATGGCGCT CATGACTTGC CCAGAGATGT CATTGGTGTT GTCGAATGAA ACGTCTGTGG TCGTAGCACC AACCTGTAGG TATGTCATTT TCTCGAAGCG AAGCTCTTCT TTATCACAAG AAAGGCTGCC TTCTGGAAGT CAGAGGAAAA GCCAGAGTTT GGAGTGTTCC AATGGTAGGT TGGTAGGCCG GTACGAGCAA GGAAGTCCAG ACAGAGTCTC AGACTGTTGG CTGGCAATTA AAACCAACCA GTACCTCACA ACAGAAGTCA TGGTGTCAAA TCAACAGATG CTCGAAGATG AGTGTTATGT TCAAGCTTAC TATCTGGTCT TCTGTATACA CGAGGGGTAC CGCATCAATC CGATCTTCAA TCCAGATACG TCCTCCTCGG GCATGTGACC TTCGTGTTCT GTCCGGTCTT TGCTAGCGGG TGTAACGTTG AATATTGGAT CAGAACGTGA ACGTGAGCCT GGTCCAGAGG AGCCCAGCTC GGTGGGATAT GTATCATAGT GGAGATGGGA GCTTTATAAA CACTATCCAG GTGGTTAGGT AAGAGAATGA GGATAGACAC GAAGAACAGT CTCAAACCTC TGCTTATACA TCTTTCATTG GTGACTTTCT TATGGGAGCA CTGTGTGTAC TATTGAAACA GAGTTGGAAT GACAATTAAG TTTACTGACA GCAGC |
mRNA UTR + CDS |
| >Mp5g03900.1 GCGAGCTAGC GAGCGCGAGC GCCAGGGCCA GGGCGAACGC GAACGCGAAG GAGTGAGTGA ATGCATGTGG ACGAGGGCGG CCGAGCTCGC ACCAGGAAGA GCTGTAGAGC AATTTCGTCG CGCCGTGGCG ATTCGATTGC GATTGGAACA TGATCGTCGA GTCTCCGTGT ACGCAATTGC GATCTCATGC GGATTTGAGC GAGCTGAGCT CGAGCTTCCT CCGCGCCAAG TACCGGGCGA CGACGAGAAA TCGAGAAATC GAGACCACGG CGAGCACGAG CACGAGGACG AAGACGAGGA CAGGTCGCGG AAGCCAGAGC AGCAGCGAGA GATTTTGCTG CCTTTCTGTG GTGAGGCGTT TTGCTGAGAG AGGGAGGGCG AGGGCGAGGG CGAGGGCGAA GGCGAAGGAC GAGGAGCGTG AGTAGGGAGC CGACAGTTAT CAGACGGTCG CACCTCGTCG GTCAGCGGTC TTGCCTGCAA GTTTGACATC ATGGCGAGCG AGAAGAAGGA TGCCAATTCC CAGAATACTC AGGATCAGCT CAAGCGAGCA GAAATTTACA CTTACGAGGC ACCGTGGCTT ATTTACGGCA TGAATTGGAG TGTACAGAGG GAACACAAGT TCCGTCTTGC CATTGGAAGT TTCATCGAGG AGTACTCGAA CAAGGTGGAA ATTGTGAGGC TTGATGATGA GACGGGTAAG TTCAATTCGG ATCCGAAGCT TTCCTTCGAA CACCCGTATC CCACGACGAA AATAATGTTC ATCCCCGACA AGGAGAGCCA AAAGCCTGAC CTCATGGCCA CCACCGGAGA CTATCTACGC ATCTGGCAGA TCAATGAAGA CAAGGTGGAG CTCAAGAGTC TTCTCAACAA CAACAAGAAT AGCGAGTACT GCTCCCCGCT TACGTCGTTT GATTGGAATG AGACTGAGAT GAGACGGCTG GGTACCTCCA GTATCGATAC AACCTGCACT ATCTGGGACA TAGAGAAGGA GGTGGTAGAC ACGCAACTCA TTGCTCACGA CAAGGCTGTA TATGATATAG CTTGGGGAGG AGTAGGAGTG TTTGCTTCAG TGTCGGCCGA TGGATCTGTG AGGGTGTTCG ATCTGAGAGA TAAAGAGCAC TCTACGATCA TCTATGAGAA TCCTCAACCT GACACTCCTC TTCTTCGACT TGGGTGGAAC AAACAAGACC CGCGCTACAT GGCGACCATT GTCATGGACT CTGCGAAGGT CATTGTTTTG GACATTCGAT TCCCCACGCT GCCAGTGGCA GAGCTACAAC GCCATCAGGC TTGTGTAAAT GCAGTAGCAT GGGCTCCTCA CAGCTCCTGC CACATCTGCA CAGCGGGTGA TGATTCGCAG GCTTTGATCT GGGACTTGTC CACTATGAGC ACACCCGTGG ACGGAGGTCT CGACCCTATT CTTGCTTACA CGGCAGGGGC TGAAATCAAT CAGCTTCAGT GGTCGTCTAC GCAGCCGGAC TGGGTGGCCA TAGCATTTTC CAACAAGTTG CAGATTCTCA GGGTGTGAGG TTTTAAGTAC TTCTCACCAA TTTTGGTGGA CATCTGGGTG TGAAATAATC GGGGCCTTGA TGCAAGGGAA GAAGGGCGAT TCACCCATTT GCGGGACGAT GGTGATGACA TCCTCCTTTG CATTCTCTAT GCAGTGATGA TTTTTAGTTT GGCGCTGTAT CACATCTCTG GATCGGATGG TCAACTTTGA GCAGATTCAT TGGAATGTGA GTACTCAGCA GAAGCATTGT AACAGTACGT CGGAGGTTTC GTATTGGAGC CTAGAGAATT TAGTCGAATC TGGAGTAGTA TACTGGACCT TCTCATCTTT CCCCTAGGAT CCCAGTCTGG GCAGGGGTTG GAGGCGTGGC CGATTCTAGC CTGCAGACCA GAGCAAACTT ACACGATCAA TGTTCTGCAT TATACTATGG CTGGCCGACC ATTGATCTCT CATTGCGAAC TGAAAGTATT TGTGTAGGAA ACAGAGTCAT GTACATCTCG AATCCATTGC CCATGGTTTG CTGCTGGTTG GATTAGTATC TGGAAGCGAA ACTGCTCCTT CCGGCAAGGC CGTGTCGAAT GTGCCTATTT TGTGGATGCA AGGTACCAGG ATATGCACTA TCGGATACAG CTTTTGCTCT GACGGTCGAG ATGACATGGA TGACCTGAAG TGATCTGCCA CAACAGCAGG TGCATCTTTT GAGGTGGAGA GTCACTCTTC GAGAGGATTT TCATAGTAAT GGGTATGGGA GTTGTAGATG ACGCATCAGC TTGCGTTATG GCGCTCATGA CTTGCCCAGA GATGTCATTG GTGTTGTCGA ATGAAACGTC TGTGGTCGTA GCACCAACCT GTAGGTATGT CATTTTCTCG AAGCGAAGCT CTTCTTTATC ACAAGAAAGG CTGCCTTCTG GAAGTCAGAG GAAAAGCCAG AGTTTGGAGT GTTCCAATGG TAGGTTGGTA GGCCGGTACG AGCAAGGAAG TCCAGACAGA GTCTCAGACT GTTGGCTGGC AATTAAAACC AACCAGTACC TCACAACAGA AGTCATGGTG TCAAATCAAC AGATGCTCGA AGATGAGTGT TATGTTCAAG CTTACTATCT GGTCTTCTGT ATACACGAGG GGTACCGCAT CAATCCGATC TTCAATCCAG ATACGTCCTC CTCGGGCATG TGACCTTCGT GTTCTGTCCG GTCTTTGCTA GCGGGTGTAA CGTTGAATAT TGGATCAGAA CGTGAACGTG AGCCTGGTCC AGAGGAGCCC AGCTCGGTGG GATATGTATC ATAGTGGAGA TGGGAGCTTT ATAAACACTA TCCAGGTGGT TAGGTAAGAG AATGAGGATA GACACGAAGA ACAGTCTCAA ACCTCTGCTT ATACATCTTT CATTGGTGAC TTTCTTATGG GAGCACTGTG TGTACTATTG AAACAGAGTT GGAATGACAA TTAAGTTTAC TGACAGCAGC |
CDS |
| >Mp5g03900.1 ATGGCGAGCG AGAAGAAGGA TGCCAATTCC CAGAATACTC AGGATCAGCT CAAGCGAGCA GAAATTTACA CTTACGAGGC ACCGTGGCTT ATTTACGGCA TGAATTGGAG TGTACAGAGG GAACACAAGT TCCGTCTTGC CATTGGAAGT TTCATCGAGG AGTACTCGAA CAAGGTGGAA ATTGTGAGGC TTGATGATGA GACGGGTAAG TTCAATTCGG ATCCGAAGCT TTCCTTCGAA CACCCGTATC CCACGACGAA AATAATGTTC ATCCCCGACA AGGAGAGCCA AAAGCCTGAC CTCATGGCCA CCACCGGAGA CTATCTACGC ATCTGGCAGA TCAATGAAGA CAAGGTGGAG CTCAAGAGTC TTCTCAACAA CAACAAGAAT AGCGAGTACT GCTCCCCGCT TACGTCGTTT GATTGGAATG AGACTGAGAT GAGACGGCTG GGTACCTCCA GTATCGATAC AACCTGCACT ATCTGGGACA TAGAGAAGGA GGTGGTAGAC ACGCAACTCA TTGCTCACGA CAAGGCTGTA TATGATATAG CTTGGGGAGG AGTAGGAGTG TTTGCTTCAG TGTCGGCCGA TGGATCTGTG AGGGTGTTCG ATCTGAGAGA TAAAGAGCAC TCTACGATCA TCTATGAGAA TCCTCAACCT GACACTCCTC TTCTTCGACT TGGGTGGAAC AAACAAGACC CGCGCTACAT GGCGACCATT GTCATGGACT CTGCGAAGGT CATTGTTTTG GACATTCGAT TCCCCACGCT GCCAGTGGCA GAGCTACAAC GCCATCAGGC TTGTGTAAAT GCAGTAGCAT GGGCTCCTCA CAGCTCCTGC CACATCTGCA CAGCGGGTGA TGATTCGCAG GCTTTGATCT GGGACTTGTC CACTATGAGC ACACCCGTGG ACGGAGGTCT CGACCCTATT CTTGCTTACA CGGCAGGGGC TGAAATCAAT CAGCTTCAGT GGTCGTCTAC GCAGCCGGAC TGGGTGGCCA TAGCATTTTC CAACAAGTTG CAGATTCTCA GGGTGTGA |
Protein |
| >Mp5g03900.1 MASEKKDANS QNTQDQLKRA EIYTYEAPWL IYGMNWSVQR EHKFRLAIGS FIEEYSNKVE IVRLDDETGK FNSDPKLSFE HPYPTTKIMF IPDKESQKPD LMATTGDYLR IWQINEDKVE LKSLLNNNKN SEYCSPLTSF DWNETEMRRL GTSSIDTTCT IWDIEKEVVD TQLIAHDKAV YDIAWGGVGV FASVSADGSV RVFDLRDKEH STIIYENPQP DTPLLRLGWN KQDPRYMATI VMDSAKVIVL DIRFPTLPVA ELQRHQACVN AVAWAPHSSC HICTAGDDSQ ALIWDLSTMS TPVDGGLDPI LAYTAGAEIN QLQWSSTQPD WVAIAFSNKL QILRV |