Mp5g03960



Description

Annotation

Database ID Description
CDD cd01861 Rab6
FunFam G3DSA:3.40.50.300:FF:000229 Probable Ras-related protein Rab-6A
Gene3D G3DSA:3.40.50.300 -
KEGG K07893 Ras-related protein Rab-6A
KOG KOG0094 GTPase Rab6/YPT6/Ryh1, small G protein superfamily; [U]
NCBIfam TIGR00231 small GTP-binding protein domain
PANTHER PTHR47977 RAS-RELATED PROTEIN RAB
PRINTS PR00449 Transforming protein P21 ras signature
Pfam PF00071 Ras family
ProSiteProfiles PS51419 small GTPase Rab1 family profile.
ProSiteProfiles PS51420 small GTPase Rho family profile.
ProSiteProfiles PS51421 small GTPase Ras family profile.
SMART SM00173 ras_sub_4
SMART SM00174 rho_sub_3
SMART SM00175 rab_sub_5
SMART SM00176 ran_sub_2
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
GO GO:0003924 GTPase activity
GO GO:0016192 vesicle-mediated transport
GO GO:0005525 GTP binding
MapolyID Mapoly0141s0004 -

Nomenclature

Gene symbol Product Transcript ID Status
MpRAB6 RAB GTPase Published

Associated Literature (AI-based literature mining)

RAB GTPase; genome paper: Mapoly0141s0004.1 (from nomenclature)

0 core 1 peripheral

Minamino, N., et al. (2018) · Plant and Cell Physiology  research experimental background
MpRAB6 secretory RAB GTPase

Transcript models

Transcript ID Location Sequences Extract region
Mp5g03960.1 chr5:5705837..5709588 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g03960.2 chr5:5705943..5710164 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g03960 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g03960 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.