Mp5g12920



Description

Annotation

Database ID Description
Gene3D G3DSA:3.40.1000.10 Mog1/PsbP, alpha/beta/alpha sandwich
MobiDBLite mobidb-lite consensus disorder prediction
MapolyID Mapoly0092s0016 -

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining)

Host gene overlapping MpmiR11737a, encoding a chloroplast PsbP protein; MpmiR11737a transcription initiates within its intron, identified through genomic analysis.

1 core 0 peripheral

Aggarwal, B., et al. (2024) · RNA Biology  research experimental subject
Host gene overlapping MpmiR11737a, encoding a chloroplast PsbP protein; MpmiR11737a transcription initiates within its intron, identified through genomic analysis.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g12920.2 chr5:16946970..16948799 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g12920.1 chr5:16946970..16957148 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g12920 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g12920 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.