Mp5g13130



Description

Annotation

Database ID Description
PANTHER PTHR31083 UPSTREAM OF FLC PROTEIN (DUF966)
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.160.60 Classic Zinc Finger
Pfam PF06136 SOSEKI protein DIX-like domain
KOG KOG4246 Predicted DNA-binding protein, contains SAP domain; N-term missing; C-term missing; [R]
MapolyID Mapoly0032s0007 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSOK MpSOSEKI protein Published

Associated Literature (AI-based literature mining, Beta-version)

Marchantia's single SOSEKI protein; MpSOK-Citrine was expressed and showed clear polar localization in gemmae coordinated among cells, resolving into polar puncta at high resolution similar to Arabidopsis SOK1. Demonstrates that DIX-domain-driven polar localization is retained in a species with only one SOSEKI gene.

1 core 0 peripheral

van Dop, M., et al. (2020) · Cell  research experimental subject
Marchantia's single SOSEKI protein; MpSOK-Citrine was expressed and showed clear polar localization in gemmae coordinated among cells, resolving into polar puncta at high resolution similar to Arabidopsis SOK1. Demonstrates that DIX-domain-driven polar localization is retained in a species with only one SOSEKI gene.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g13130.1 chr5:17336010..17342060 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g13130.2 chr5:17336010..17342060 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g13130 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g13130 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.