Mp5g17270



Description

Annotation

Database ID Description
Pfam PF00651 BTB/POZ domain
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd18312 BTB_POZ_NPY3-like
SUPERFAMILY SSF54695 POZ domain
ProSiteProfiles PS51649 NPH3 domain profile.
Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A
PANTHER PTHR32370 OS12G0117600 PROTEIN
SMART SM00225 BTB_4
Pfam PF03000 NPH3 family
ProSiteProfiles PS50097 BTB domain profile.
KOG KOG4441 Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes; C-term missing; [TR]
KOG KOG4279 Serine/threonine protein kinase; N-term missing; [T]
MapolyID Mapoly0182s0022 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNPH3 NPH3/RPT2-like (NRL) protein Published

Associated Literature (AI-based literature mining, Beta-version)

NPH3/RPT2-like (NRL) protein (from nomenclature)

0 core 1 peripheral

Suetsugu, N., et al. (2016) · Proceeding of the National Academy of Sciences USA  research sequence comparator
NPH3 ortholog (Mapoly0182s0022); single NPH3-clade NRL gene (phylogenetic comparison).

Transcript models

Transcript ID Location Sequences Extract region
Mp5g17270.1 chr5:21468662..21473858 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g17270 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g17270 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.