Mp5g19810



Description

Annotation

Database ID Description
Gene3D G3DSA:1.10.238.10 -
ProSiteProfiles PS50222 EF-hand calcium-binding domain profile.
FunFam G3DSA:1.10.238.10:FF:000073 calcineurin B-like protein 3
Pfam PF13499 EF-hand domain pair
SMART SM00054 efh_1
PANTHER PTHR23056 CALCINEURIN B
CDD cd00051 EFh
SUPERFAMILY SSF47473 EF-hand
PRINTS PR00450 Recoverin family signature
KEGG K06268 serine/threonine-protein phosphatase 2B regulatory subunit
KOG KOG0034 Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein; [T]
MapolyID Mapoly0134s0040 -
GO GO:0019722 calcium-mediated signaling
GO GO:0005509 calcium ion binding
GO GO:0019900 kinase binding

Nomenclature

Gene symbol Product Transcript ID Status
MpCBL-C Calcineurin B-like protein Published

Associated Literature (AI-based literature mining, Beta-version)

Calcineurin B-like protein (from nomenclature)

0 core 1 peripheral

Tansley, C., et al. (2023) · New Phytologist  research experimental tool
Type I CBL proposed as the SOS3/AtCBL4 homologue; strongly salt-downregulated but osmotic-stress-insensitive, suggesting an ionic-stress role; interacts with both MpCIPKs in planta.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g19810.1 chr5:24223791..24227695 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g19810.2 chr5:24223791..24229259 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g19810 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g19810 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.