Mp5g21520



Description

Annotation

Database ID Description
PANTHER PTHR24009 RNA-BINDING (RRM/RBD/RNP MOTIFS)
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.70.330 -
Pfam PF00076 RNA recognition motif
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
SMART SM00356 c3hfinal6
Coils Coil Coil
Gene3D G3DSA:4.10.1000.10 -
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SUPERFAMILY SSF90229 CCCH zinc finger
CDD cd12458 RRM_AtC3H46_like
FunFam G3DSA:3.30.70.330:FF:000678 zinc finger CCCH domain-containing protein 53-like isoform X2
ProSiteProfiles PS51644 OST-type HTH domain profile.
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMART SM00360 rrm1_1
KOG KOG2333 Uncharacterized conserved protein; C-term missing; [R]
KOG KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; N-term missing; C-term missing; [A]
MapolyID Mapoly0106s0048 -

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H20 transcription factor, C3H Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g21520.1 chr5:27504064..27513815 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.