Mp5g23300



Description

Annotation

Database ID Description
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
Gene3D G3DSA:3.40.50.1820 alpha/beta hydrolase
SUPERFAMILY SSF53474 alpha/beta-Hydrolases
SMART SM00369 LRR_typ_2
Pfam PF00931 NB-ARC domain
Gene3D G3DSA:1.10.8.430 -
SUPERFAMILY SSF52058 L domain-like
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.40.50.300 -
PRINTS PR00364 Disease resistance protein signature
PANTHER PTHR45752 LEUCINE-RICH REPEAT-CONTAINING
Coils Coil Coil
KEGG K23504 protein SERAC1
KOG KOG4658 Apoptotic ATPase; [T]
KOG KOG2029 Uncharacterized conserved protein; N-term missing; [S]
KOG KOG0532 Leucine-rich repeat (LRR) protein, contains calponin homology domain; C-term missing; [Z]
MapolyID Mapoly0010s0128 -
GO GO:0007165 signal transduction
GO GO:0043531 ADP binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNBS-LRR18 NBS genes Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp5g23300.1 chr5:29601716..29609790 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g23300.2 chr5:29603140..29609790 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g23300 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g23300 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.