Mp5g23720



Description

Annotation

Database ID Description
PANTHER PTHR11774 GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
CDD cd02895 GGTase-I
Pfam PF00432 Prenyltransferase and squalene oxidase repeat
Gene3D G3DSA:1.50.10.20 -
SUPERFAMILY SSF48239 Terpenoid cyclases/Protein prenyltransferases
KEGG K11713 geranylgeranyl transferase type-1 subunit beta [EC:2.5.1.59]
KOG KOG0367 Protein geranylgeranyltransferase Type I, beta subunit; [O]
MapolyID Mapoly0010s0084 -
GO GO:0018342 protein prenylation
GO GO:0003824 catalytic activity
GO GO:0005953 CAAX-protein geranylgeranyltransferase complex
GO GO:0008318 protein prenyltransferase activity
GO GO:0018344 protein geranylgeranylation
GO GO:0004661 protein geranylgeranyltransferase activity
GO GO:0004662 CAAX-protein geranylgeranyltransferase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpGGT1 Secondary metabolism enzyme, Terpene biosynthesis enzymes Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g23720.1 chr5:30058732..30060742 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g23720 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g23720 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.