Mp6g00230



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:6.10.250.2940 -
Pfam PF00623 RNA polymerase Rpb1, domain 2
Pfam PF05000 RNA polymerase Rpb1, domain 4
Pfam PF04983 RNA polymerase Rpb1, domain 3
Gene3D G3DSA:2.40.40.20 -
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
Pfam PF04998 RNA polymerase Rpb1, domain 5
Gene3D G3DSA:3.30.1490.180 RNA polymerase ii
Gene3D G3DSA:1.10.132.30 -
Gene3D G3DSA:4.10.860.120 RNA polymerase II, clamp domain
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3
SMART SM00663 rpolaneu7
Pfam PF04997 RNA polymerase Rpb1, domain 1
PANTHER PTHR19376 DNA-DIRECTED RNA POLYMERASE
CDD cd02737 RNAP_IV_NRPD1_C
KOG KOG0260 RNA polymerase II, large subunit; C-term missing; [K]
MapolyID Mapoly0104s0044 -
GO GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO GO:0006351 DNA-templated transcription
GO GO:0001055 RNA polymerase II activity
GO GO:0005665 RNA polymerase II, core complex
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNRPE1b Chromatin related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

Chromatin related protein (from nomenclature)

0 core 1 peripheral

Ros-Moner, E., et al. (2024) · Nature Communications  research experimental background
Suppressed upon TMV infection; reported among RdDM pathway genes.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g00230.1 chr6:575982..588053 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g00230.2 chr6:575982..588053 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g00230 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g00230 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.