Mp6g01120
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. |
| SMART | SM00360 | rrm1_1 |
| Pfam | PF00098 | Zinc knuckle |
| FunFam | G3DSA:4.10.60.10:FF:000003 | serine/arginine-rich splicing factor RS2Z32-like isoform X1 |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| Gene3D | G3DSA:3.30.70.330 | - |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. |
| SMART | SM00343 | c2hcfinal6 |
| Pfam | PF00076 | RNA recognition motif |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains |
| FunFam | G3DSA:3.30.70.330:FF:000272 | Serine/arginine-rich splicing factor RS2Z32 |
| Gene3D | G3DSA:4.10.60.10 | - |
| PANTHER | PTHR48038 | RIBONUCLEOPROTEIN RB97D |
| KOG | KOG0105 | Alternative splicing factor ASF/SF2 (RRM superfamily); C-term missing; [A] |
| KOG | KOG4400 | E3 ubiquitin ligase interacting with arginine methyltransferase; N-term missing; C-term missing; [O] |
| MapolyID | Mapoly0052s0092 | - |
| GO | GO:0003723 | RNA binding |
| GO | GO:0003676 | nucleic acid binding |
| GO | GO:0008270 | zinc ion binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSR5 | SR proteins, RNA-splicing | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp6g01120 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp6g01120.1 GTGGGATCAC TTGTTTTAGC ATCTGAACTG GCGATAACGC CAGAGGAAGA TCAGTCGTCG TCAGATTTAC ATCGACGATG GCCAGATTTT GACAAGCATT GTGGCATCTG AGCCGTCCGT GGCGCCACTG GCGGTTGCAG TTAGGGCTGC GTTAGCGTTG TTTGCGAGCA GCAGAGAGCT CCGAACGAAG CCTCCCTCCA GTGCTCGTGC GAGCGCTCGG TCGTTCCAGC TCCGATTATG AGCCTGCGCA GTTTTCTTTT TCGGGTTTAA TCGGCTGAAG AGATCTGGTG TCGCTGTGCG TGTGGTGGCA AAGCTCTTTG GGAGACGTAT CGGACTGTCG CTGCGACGAC GCCGAGTCTG CTGTGGAGGT GTCTTGAGCA TCCGGGCTTT TTAAAACTCT TAATTTGATA GAGGTATGGC CTCCCTGCGC TTTTTTCCTT CCTCCCTCCT CTTCCTCTTT GTGCGGCCCC TTCGTTTTTG TCTACGGCTC TGTGATGCTC GCTCCTTGTG TGTTTATTCA ACTTCATGAT CGTGAGAAAC AAATCTCCAC GGTAATTTGA GAAAGCGATG ATTGTGCACG CGACTCGGAC CTGCGTGTGC GCGTGATTTG GACGGGGTTT TTCGCATGGG AAGTGTCCCA TTTGGAGAGC GGCAACTGTA TCCCTGTGCA TTCGACTCTG TTAGGTTTGT CAGGCTGAAA CCTACTAAGC TTGCGTAATA TATGTTTTGA AACGAAGGCT CCAGCACTGA CAGAGATGGT GTGCTCTTGT AACTGCTTAA AGTTGCACGA GCTTTCGCTG CTGTTCAGTC CACCTCATAT GCCCTAGAGT ATGACATTAG GAAGATGAGG CAGTATGTTG AAATTTGAGG ATGATCTGAG GAGGCCAGAC GTCTGGATTG TGATGTTCGT GGTTGTCAAG GTGTCGCGTT TCTCATGAAG CTTCTGACAG CAGATCAAAG TGTACTGAAG GATATTACCC GAGAGTTCTT GTCCAGACAA ACGAGGGTGG ATCTGCTTTT AATGCCAGAG GGCCCCGACA TATTTGTGAT ACACGATGAT TTCTTAGATG ATATGTTTAT TATGTCCAAT TCATATATGA CTGTAATTTT CTGCTTAGAA TGAAAGTTGA ACTTCGAGAT CAAAGTCAAA TTTGACCTAA GTTCGTGGTG TCCAAGAGAA GCTTCGATAC TTTGTTTCCG CCTTGGAATA AAGCGTTGTT TTGGGTCCTT CATGGGCCAT AATCTGGTCA ACACGCTGTT TTCATTGAAG TCCGTATACA TGACATAGTT TATGGGAAAA TTCGCAGGAT TAAAGTAAGA CGTTTCCTAT GCAAATAAAG ATCACAATGA ATTTCGGGTA ATGATAGTCT TACGATTTCG ATGTGCCTTA TCTGTTGTGG ATCCTACTCC TCTTGTCTTA GCTTTGGCCG ATTGGATGAT CGCGGATGGA TCAGCACGAA TAGGATTCTC AAGCCTCTTT CTTTCGTGAA GCGGAGTCAA GGCTGCTGTA GTATATATAC AAGCTGTCAT GATGTCCTTC TGTTTTGTAC TTGCATATCT ATCACTAGTA ATTTGCATGT TACTTATAAT TATAATGTCA CAAAAAAGTA ATCTACGTGA GTTCTCTTCT ATCGAGATAG TCGTCTTCGA GGATGCTAGC TATACCAAGG GCAAAGAACA CCATTTCCAT ATTAGTGATG ATTATTGTGG AATAGGGAAT ATTCTTGGGC ACCGCTCAAC ACTTCTTAGT TCTTTGTATT CCATCAATTC ATGTCTGCGT GGGGCTTTCA CGTTTTCCGG CTGTGGCTGT CCGTGTGTCT GTCTGATGTT TTCGCATCAG CCTGGCCTTC TACATGGCCC TAATCGTGCA TTGCTTGGAT TGGATGCGGT GCAAGTTGCA CTTTATCTCC TGCGACTTTG TGCCAAATTC TGTTAACTAG ACGTGGGATA ATCGTTTCTG GCAATCGTCA AGAGAGAGAG AATGTACAAA GCAACGAGCT GGTAAACCGT GTCGGATCAC AATTCATTGT AGTGATGTGC ATGTTATATT GTGTCGTTTC GTCTCATGTC TTCTGCGAAT GATTGTCTCG ATGGTCAATC CTTTGGGTCC TTTGTTCGAT TATCTCGTTT CTACTTTTCT TGCTCCGAGG CCTCAGTTTC GCCATTTGCA TCCAAGTATG TGGGGTGGAA TGAACTTTTT GTACCGCTCT ATTGACAGCT TTTATCGTGG CTCAACCTCT GATTCTCGTA CAGACGGTCA CTGGTTCTTA CGCTCTGCTT CTTAACATCT GGGTTTTGCA CACAATGTTG GTTTGCTCGC CTTTTATGGT CGTTTTGTGT CCTTTTGCCT CTTCACTGCG TAATTCGTCA GTTGTGTTTT TGTCTCAGCT TGTCGCCTAC CTTTTGTGAT ACTAAGCGCT CGTATCCGCT GAACCTCGTC GTTCGGTGGA ATTTCCTAGC GGGGCTGATT GGTACAAGTC ACTGGAGTCC ATGTCGTGTT ATTACTGAGT TTTGTATTCT GAATGTGTAG AGCGTTTAAG CTATTTTTTG CTCCGTGGAG TGATGCCTCG ATATGAAGAT CGAGGGGGAG GTCAAACCCG GCTTTACGTC GGTCGGCTTT CAAGCAGGAC TCGCAGCCGT GATCTTGAGG ATCTTTTCAG CAAGTACGGA AGGTATGGCA TTGCATCTGA CGCTTAATAT GAATACTACT CACTGATTCT GCACAGGAGA TCTTTCGGGT GGGAGTATCA TAGAAGCTTC TTAGTAATCT CCTTCTGTCG ACATAGATAA CCCGGCGAGG GCGTAGAAGC ACTGTCCGAA CCTTCAACAA CTTGATCCTA GTGCAAGTGC CTGAAGCCCA ATTAGACACT CTTAAATCGG ACTCTTTCCG ACAGCCGTAG ATTTTCCTCA GTCTTTGAGG AAAGCAGTCA AAGGCGAGAA CATCTCGCAG CAAAACGATA CCTCGTTGTG TCATTCAGTT CTGAAATATT TCAGAACGAA AACTGAATGC AGAGGGCCTG CCACTTTGAT TTGTAAGGGC GAAGGCAGAT GAGCGTTACG GGGCTAAGCG TTAACTCGCA TGATGTTGTT GAAGGTTGGT GGGTTCTCGC CGGCCAGGAG GTCTTTGGTG AGAGGGTGGC CTTGGTGGCA TGGTGGCCCT TGCTCGCGAG GGATTTGGGA GACTGGCGCA TCTAGGCGTG CATATGTATG TATGATTGTT CATACGTACA TACATGGAAT GGCGAGGGTG GAAATGGTGT TTGATTCAAC TGACTCGCGG TGTATCGTGC CGTGCCTTGA CGTGGTGCGC TGCTCTTTTT TGGCACGACT TTTCGCAGAG TCCGAGACGT GGATTTGAAG CACGACTTCG CCTTCGTTGT GTGTATACCT TACCCTTCTG CATCGTAGTT CGTTTAGTAG TACATACAGT TGTCTGTTGA TTTTCTGCAA GTGTGAATAT TACCCTAGAA TAGCTCCCGT ATCCACGTTA GCCGCACTAA ACCCAATCTA TTGGCTGTGG AATATAGCCC ACCGGTAAGT CCTCTCTGTA GATAACAGTA GGTTATTTCC TTCAACCGGG GACGCATTGT TACTCGCAGG AATTTAGTGA CCCCCGAGAC GCCGACGAAG CTATCCGCTA CCTGAATGGT AAAGACTTCG AAGGTAGTCG TCTGGTGGTG GAGTTTGCTA GACGGGTGAG GGACTTCGCC ATCTCCTCAT CACTGGTCAT GCCCTGACCT CCTGCTTCAC ACCCACCTCA TTTGATTTTC CTTTCAATTT ATATGAAGCA TGTACTTTTC AGATGTTCAA ATTTATGAGG AATTACTGTT TTTATCCGTG TATTGCTAGA GGAACTGGAA TGTTTTCAAA ATGAGAATGA GTAATGTGGA CAAAGTCCAC TCACACAAAA GATTAGCGGT CAATGATCAT AAATCTGACC CAAAGCTTGA TATCGTACTG ATGTGCAGGG TCCCCGAGGA CCAGGTGGAG CCCGCGAGTA CCTTGGAAGA GGCCCTCCTC CGGGAACAGG ACGATGCTAC AATTGTGGAA ACGATGGACA TTGGGCCCGA GACTGCAAGG CTGGGGATTG GCGTGACAAA TGCTACCGTT GTGGACAGCG GGGCCACATA GAGCGTAACT GCCGAAACAG TCCTCGCCCC TTCAACAGGT CAACACTGGT GCATTTGGGA GTCATTTAAC CTCAGAGCAG TTGACGTAGA ACGTGTCCAA TTTGTTATGG TTTATGTTAT TGACGTTTGA AGTGCCTTTT GGCAGGTATG AGCGCAGTCG TCCTTCTCGC TCCCGTTCCC CAATCGATCG TTCCCGCTCC AGGTCGCCTC GTCGCGGAAG AAGTCGAAGC AGAAGCTACA GCAGAAGCCG TAGTTACAGG TGTGACTTTT CTTTCACATG AACGGATAAG AAATGTGTAC TGGTCAATGA AGTGATGCAC ACTACTGTAA TGTGTAGGGT TTATTATGTA CAGATAATGC GACGATTTAA CTGTAGGAAT TGATGATTTG TCAGCAAAGG AGACCTTCAA ATTCTAGGTG ACATAGCATA TTCCATTTAC GAATGCTAGC CTGAACGCAC ATAAGTTCGC TCACGTGTGT CTCGTTATTG GTCTTGCAGT CCGAGAAAGA CAAGCAGGAG TCCCGTCAAG GAAGAAACCC GGGGCCGCAG AATTACGCGC AGTCGGAGCC GCAGTTTGTC TCCCGGTCTT CCACCACGGA AAGAAAGTCG AAGCCGATCT CGGAGTCCTG TGCGTAGTCC AGTGGGAAAT GGTAGGAGCA TCAGCCGCAG CCCGCAACCA ACCCGAAGAG AACCGAGTCG CAGTCCTAGT CCAAGAGATC TCAGCCCTGC TCCGAGGAAG GACCTCAGCC CAGAGCCAGA AGCTGATAAC CATAGTCCCA TGACAAAGGA CTCACCACCC CAAAGGGATG AGACCAGTCT TAGTCCTTCT GCCGACTGAG TTTTCTCGCC ATTGGCCCTG CTCTTTCTCA TAGGCAGGTA CAGATTTCAG ACAGCATGAG TTGTGCATGG TACCAACGAG GGATCTTGTG GACTGTAGAT GGTTCGAATG ATTATCCACG TTTGGTGTGC TGTATTAAAG TAGTTAGTGG ATCTTCAGAA CGATTACTGT CTACAAGTTT GATGAATACA ATTGGACCTC GACGGGTTCT ACGAGAACTA GCCACCAGTT AATTGGATAT TCATTGCCTG AAAAATGCTG TTAAGGGTGA GCATCCAATC CCCTCTTCAT GTTACTCCCG CGGCTCAGGT ATCCTAGATG TCCGAGAAGG TACGCAAGTC AGTCTGCCCA GGGTCCTTGT TTTTGTGGGC CTAAGTGACT TGGCCAAATC TTACATAGTC AATAGAGTAT GCACCAAGTC TAGAGCCACC AGGGATGGAG GGCAGCTTCG TATATACGAC AGCGGAAGCA CATATCGGCT TGAGTAGTGC TGAGAAATGG CACGTGCATA TCTCTTTTGT CCTACTCTGA TGTAAAGCTT TTAATAAACT TCCGTCCTGT TCAGGC |
mRNA UTR + CDS |
| >Mp6g01120.1 GTGGGATCAC TTGTTTTAGC ATCTGAACTG GCGATAACGC CAGAGGAAGA TCAGTCGTCG TCAGATTTAC ATCGACGATG GCCAGATTTT GACAAGCATT GTGGCATCTG AGCCGTCCGT GGCGCCACTG GCGGTTGCAG TTAGGGCTGC GTTAGCGTTG TTTGCGAGCA GCAGAGAGCT CCGAACGAAG CCTCCCTCCA GTGCTCGTGC GAGCGCTCGG TCGTTCCAGC TCCGATTATG AGCCTGCGCA GTTTTCTTTT TCGGGTTTAA TCGGCTGAAG AGATCTGGTG TCGCTGTGCG TGTGGTGGCA AAGCTCTTTG GGAGACGTAT CGGACTGTCG CTGCGACGAC GCCGAGTCTG CTGTGGAGGT GTCTTGAGCA TCCGGGCTTT TTAAAACTCT TAATTTGATA GAGAGCGTTT AAGCTATTTT TTGCTCCGTG GAGTGATGCC TCGATATGAA GATCGAGGGG GAGGTCAAAC CCGGCTTTAC GTCGGTCGGC TTTCAAGCAG GACTCGCAGC CGTGATCTTG AGGATCTTTT CAGCAAGTAC GGAAGAGTCC GAGACGTGGA TTTGAAGCAC GACTTCGCCT TCGTTGAATT TAGTGACCCC CGAGACGCCG ACGAAGCTAT CCGCTACCTG AATGGTAAAG ACTTCGAAGG TAGTCGTCTG GTGGTGGAGT TTGCTAGACG GGTGAGGGAC TTCGCCATCT CCTCATCACT GGGTCCCCGA GGACCAGGTG GAGCCCGCGA GTACCTTGGA AGAGGCCCTC CTCCGGGAAC AGGACGATGC TACAATTGTG GAAACGATGG ACATTGGGCC CGAGACTGCA AGGCTGGGGA TTGGCGTGAC AAATGCTACC GTTGTGGACA GCGGGGCCAC ATAGAGCGTA ACTGCCGAAA CAGTCCTCGC CCCTTCAACA GGTATGAGCG CAGTCGTCCT TCTCGCTCCC GTTCCCCAAT CGATCGTTCC CGCTCCAGGT CGCCTCGTCG CGGAAGAAGT CGAAGCAGAA GCTACAGCAG AAGCCGTAGT TACAGTCCGA GAAAGACAAG CAGGAGTCCC GTCAAGGAAG AAACCCGGGG CCGCAGAATT ACGCGCAGTC GGAGCCGCAG TTTGTCTCCC GGTCTTCCAC CACGGAAAGA AAGTCGAAGC CGATCTCGGA GTCCTGTGCG TAGTCCAGTG GGAAATGGTA GGAGCATCAG CCGCAGCCCG CAACCAACCC GAAGAGAACC GAGTCGCAGT CCTAGTCCAA GAGATCTCAG CCCTGCTCCG AGGAAGGACC TCAGCCCAGA GCCAGAAGCT GATAACCATA GTCCCATGAC AAAGGACTCA CCACCCCAAA GGGATGAGAC CAGTCTTAGT CCTTCTGCCG ACTGAGTTTT CTCGCCATTG GCCCTGCTCT TTCTCATAGG CAGGTACAGA TTTCAGACAG CATGAGTTGT GCATGGTACC AACGAGGGAT CTTGTGGACT GTAGATGGTT CGAATGATTA TCCACGTTTG GTGTGCTGTA TTAAAGTAGT TAGTGGATCT TCAGAACGAT TACTGTCTAC AAGTTTGATG AATACAATTG GACCTCGACG GGTTCTACGA GAACTAGCCA CCAGTTAATT GGATATTCAT TGCCTGAAAA ATGCTGTTAA GGGTGAGCAT CCAATCCCCT CTTCATGTTA CTCCCGCGGC TCAGGTATCC TAGATGTCCG AGAAGGTACG CAAGTCAGTC TGCCCAGGGT CCTTGTTTTT GTGGGCCTAA GTGACTTGGC CAAATCTTAC ATAGTCAATA GAGTATGCAC CAAGTCTAGA GCCACCAGGG ATGGAGGGCA GCTTCGTATA TACGACAGCG GAAGCACATA TCGGCTTGAG TAGTGCTGAG AAATGGCACG TGCATATCTC TTTTGTCCTA CTCTGATGTA AAGCTTTTAA TAAACTTCCG TCCTGTTCAG GC |
CDS |
| >Mp6g01120.1 ATGCCTCGAT ATGAAGATCG AGGGGGAGGT CAAACCCGGC TTTACGTCGG TCGGCTTTCA AGCAGGACTC GCAGCCGTGA TCTTGAGGAT CTTTTCAGCA AGTACGGAAG AGTCCGAGAC GTGGATTTGA AGCACGACTT CGCCTTCGTT GAATTTAGTG ACCCCCGAGA CGCCGACGAA GCTATCCGCT ACCTGAATGG TAAAGACTTC GAAGGTAGTC GTCTGGTGGT GGAGTTTGCT AGACGGGTGA GGGACTTCGC CATCTCCTCA TCACTGGGTC CCCGAGGACC AGGTGGAGCC CGCGAGTACC TTGGAAGAGG CCCTCCTCCG GGAACAGGAC GATGCTACAA TTGTGGAAAC GATGGACATT GGGCCCGAGA CTGCAAGGCT GGGGATTGGC GTGACAAATG CTACCGTTGT GGACAGCGGG GCCACATAGA GCGTAACTGC CGAAACAGTC CTCGCCCCTT CAACAGGTAT GAGCGCAGTC GTCCTTCTCG CTCCCGTTCC CCAATCGATC GTTCCCGCTC CAGGTCGCCT CGTCGCGGAA GAAGTCGAAG CAGAAGCTAC AGCAGAAGCC GTAGTTACAG TCCGAGAAAG ACAAGCAGGA GTCCCGTCAA GGAAGAAACC CGGGGCCGCA GAATTACGCG CAGTCGGAGC CGCAGTTTGT CTCCCGGTCT TCCACCACGG AAAGAAAGTC GAAGCCGATC TCGGAGTCCT GTGCGTAGTC CAGTGGGAAA TGGTAGGAGC ATCAGCCGCA GCCCGCAACC AACCCGAAGA GAACCGAGTC GCAGTCCTAG TCCAAGAGAT CTCAGCCCTG CTCCGAGGAA GGACCTCAGC CCAGAGCCAG AAGCTGATAA CCATAGTCCC ATGACAAAGG ACTCACCACC CCAAAGGGAT GAGACCAGTC TTAGTCCTTC TGCCGACTGA |
Protein |
| >Mp6g01120.1 MPRYEDRGGG QTRLYVGRLS SRTRSRDLED LFSKYGRVRD VDLKHDFAFV EFSDPRDADE AIRYLNGKDF EGSRLVVEFA RRVRDFAISS SLGPRGPGGA REYLGRGPPP GTGRCYNCGN DGHWARDCKA GDWRDKCYRC GQRGHIERNC RNSPRPFNRY ERSRPSRSRS PIDRSRSRSP RRGRSRSRSY SRSRSYSPRK TSRSPVKEET RGRRITRSRS RSLSPGLPPR KESRSRSRSP VRSPVGNGRS ISRSPQPTRR EPSRSPSPRD LSPAPRKDLS PEPEADNHSP MTKDSPPQRD ETSLSPSAD |