Mp6g18180



Description

Annotation

Database ID Description
FunFam G3DSA:3.40.50.150:FF:000108 DNA (cytosine-5)-methyltransferase
NCBIfam TIGR00675 DNA (cytosine-5-)-methyltransferase
FunFam G3DSA:3.40.50.150:FF:000128 DNA (cytosine-5)-methyltransferase
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39
Gene3D G3DSA:2.30.30.490 -
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.
Pfam PF00145 C-5 cytosine-specific DNA methylase
Pfam PF12047 Cytosine specific DNA methyltransferase replication foci domain
ProSiteProfiles PS51679 C-5 cytosine-specific DNA methylase (Dnmt) domain profile.
Gene3D G3DSA:3.90.120.10 DNA Methylase, subunit A, domain 2
PANTHER PTHR10629 CYTOSINE-SPECIFIC METHYLTRANSFERASE
PIRSF PIRSF037404 DNMT1
Pfam PF01426 BAH domain
PRINTS PR00105 Cytosine-specific DNA methyltransferase signature
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases
SMART SM00439 BAH_4
CDD cd04708 BAH_plantDCM_II
ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site.
ProSiteProfiles PS51038 BAH domain profile.
FunFam G3DSA:3.90.120.10:FF:000002 DNA (cytosine-5)-methyltransferase
KEGG K00558 DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
KOG KOG0919 C-5 cytosine-specific DNA methylase; C-term missing; [K]
MapolyID Mapoly0038s0027 -
GO GO:0008168 methyltransferase activity
GO GO:0003886 DNA (cytosine-5-)-methyltransferase activity
GO GO:0005634 nucleus
GO GO:0010424 obsolete DNA methylation on cytosine within a CG sequence
GO GO:0090116 obsolete C-5 methylation of cytosine
GO GO:0010216 obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding

Nomenclature

Gene symbol Product Transcript ID Status
MpMET DNA methyltransferase Published

Associated Literature (AI-based literature mining, Beta-version)

DNA METHYLTRANSFERASE family protein that maintains methylation in the CG context. Its expression was profiled across the life cycle; it showed increased expression in the antheridiophore but relatively low expression in archegoniophore tissues.

2 core 1 peripheral

Ikeda, Y., et al. (2018) · Plant and Cell Physiology  research experimental subject
METHYLTRANSFERASE1 (MET1) ortholog maintaining CG DNA methylation; Mpmet loss-of-function disorganizes cell division and reveals non-CG methylation regulation in this basal land plant.
Schmid, M. W., et al. (2018) · Genome Biology  research experimental subject
DNA METHYLTRANSFERASE family protein that maintains methylation in the CG context. Its expression was profiled across the life cycle; it showed increased expression in the antheridiophore but relatively low expression in archegoniophore tissues.
Hisanaga, T., et al. (2023a) · Current Biology  research experimental comparator
DNA methyltransferase; compared with PRC2/H3K27me3 silencing.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g18180.1 chr6:24106348..24117027 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g18180.2 chr6:24105198..24117027 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g18180.3 chr6:24105359..24116666 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g18180 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g18180 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.