Mp7g03840



Description

Annotation

Database ID Description
CDD cd02894 GGTase-II
FunFam G3DSA:1.50.10.20:FF:000009 Geranylgeranyl transferase type-2 subunit beta
Gene3D G3DSA:1.50.10.20 -
PANTHER PTHR11774 GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
Pfam PF00432 Prenyltransferase and squalene oxidase repeat
SUPERFAMILY SSF48239 Terpenoid cyclases/Protein prenyltransferases
KEGG K05956 geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60]
KOG KOG0366 Protein geranylgeranyltransferase type II, beta subunit; [O]
MapolyID Mapoly0074s0013 -
GO GO:0018342 protein prenylation
GO GO:0003824 catalytic activity
GO GO:0004663 Rab geranylgeranyltransferase activity
GO GO:0008318 protein prenyltransferase activity
GO GO:0018344 protein geranylgeranylation
GO GO:0005968 Rab-protein geranylgeranyltransferase complex

Nomenclature

Gene symbol Product Transcript ID Status
MpGGT2 Secondary metabolism enzyme, Terpene biosynthesis enzymes Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp7g03840.1 chr7:5794471..5799036 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g03840.2 chr7:5794471..5799036 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g03840 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g03840 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.