Mp7g18530



Description

Annotation

Database ID Description
CDD cd00200 WD40
Gene3D G3DSA:2.130.10.10 -
Gene3D G3DSA:3.30.1370.210 -
KOG KOG0274 Cdc4 and related F-box and WD-40 proteins; N-term missing; [R]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR44489 -
PRINTS PR00320 G protein beta WD-40 repeat signature
Pfam PF00400 WD domain, G-beta repeat
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
SMART SM00320 WD40_4
SMART SM00356 c3hfinal6
SUPERFAMILY SSF50978 WD40 repeat-like
SUPERFAMILY SSF90229 CCCH zinc finger
GO GO:0005515 protein binding
GO GO:0046872 metal ion binding
MapolyID Mapoly0165s0013 -

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H30 transcription factor, C3H Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp7g18530.1 chr7:23260098..23266056 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g18530 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g18530 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.