Mp8g05890



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Pfam PF00076 RNA recognition motif
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
Pfam PF05391 Lsm interaction motif
SUPERFAMILY SSF48452 TPR-like
SMART SM00360 rrm1_1
SMART SM00386 hat_new_1
Gene3D G3DSA:3.30.70.330 -
PANTHER PTHR17204 PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
KEGG K22611 squamous cell carcinoma antigen recognized by T-cells 3
KOG KOG0128 RNA-binding protein SART3 (RRM superfamily); [A]
MapolyID Mapoly0013s0201 -
GO GO:0005515 protein binding
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding
GO GO:0006396 RNA processing

Nomenclature

Gene symbol Product Transcript ID Status
MpSEAP1 RNA-binding protein SART3 (RRM superfamily) Published

Transcript models

Transcript ID Location Sequences Extract region
Mp8g05890.1 chr8:8087414..8095613 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g05890 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g05890 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.