Mp8g06280
Description
Annotation
| Database | ID | Description |
|---|---|---|
| CDD | cd10567 | SWIB-MDM2_like |
| Gene3D | G3DSA:1.10.245.10 | SWIB/MDM2 domain |
| KOG | KOG1946 | RNA polymerase I transcription factor UAF; N-term missing; C-term missing; [K] |
| PANTHER | PTHR13844 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| Pfam | PF02201 | SWIB/MDM2 domain |
| ProSiteProfiles | PS51925 | SWIB/MDM2 domain profile. |
| SMART | SM00151 | swib_2 |
| SUPERFAMILY | SSF47592 | SWIB/MDM2 domain |
| GO | GO:0005634 | nucleus |
| MapolyID | Mapoly0013s0162 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSWIB | SWIB/MDM2-domain nuclear protein | Published |
Locus assigned by MarpolBase literature-mining curation (2026-10): GenBank LC057392 (the gene name is in its strain field); the locus carries Pfam PF02201 (SWIB domain).
Associated Literature (AI-based literature mining)
SWIB/MDM2-domain nuclear protein; YFP fusion (EFp::MpSWIB-YFP) was expressed and imaged by confocal microscopy with chlorophyll autofluorescence. MpSWIB localized mainly to nucleus and cytosol, not chloroplasts, indicating it is likely a nuclear factor rather than a cp nucleoid component. (from nomenclature)
1 core 0 peripheral
Kobayashi, Y., et al. (2016)
· Genome Biology and Evolution research experimental subject
YFP fusion (EFp::MpSWIB-YFP) was expressed and imaged by confocal microscopy with chlorophyll autofluorescence. MpSWIB localized mainly to nucleus and cytosol, not chloroplasts, indicating it is likely a nuclear factor rather than a cp nucleoid component.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp8g06280 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp8g06280.1 CTAACTATAC CCATTGAACA AAGGTCTATT TCAGAAAATA TTACAGTGAA TTAGTTTGTG ATATCTTTTA TAGAATAAGG GCTTCAAATG CCACTCGTTC ATATTTTCTA TCGATTGCAT AATATCTGAC GCCGAACGAG ATCCCCCAGT CGTGATGTTA TCAGATCCTA GCTCACTGTT TCGCTATATT CAATCGCATT CCTCTCGACG GCGTATCCCC AATTCCTCCG TGAAGAAAAC TGCAATCGTT CCCCCTCGCT GATATTGAGG CAATCGCTTC ACACAGCTCA CTGAGATCCG CACCACGTGC ACACTGCCCA TGGTTGCTGC CACTTGCTCG GAACCAGCCG CCCACCACAC TCCATTCGCG AAATCGCTTC TCGGTTCACG GATCTTAGAC ATTTGGTTGC GACGACGAAA TCGATTGCGA AGGCCGAGGC GTGGGTCCCA AGGGTTTCCT TTTGCGCACA ACGGGCGCTA AACCCCCCCC TTTTCCTCCC TCGCTCTCGC GCTCGCTCGC TCGCTCGCAA AACCTCGGGC CATAACGTTC GCCTCGCTTC TTGTCTTCTT GCTGGCTCGT GGGCCGCTGG TGTGTCAGTC AGTCAGCCCT AGCGACATTC GACCGGGCTC GTAGAGCTCG TGATAAGTTT AGCAGTTTTC CTCGAGCTGC ACTTTGGTCG CGTTCCGCTT CCGCCTCTGG GATCGGAAAT CGTGTAATTT CGATTGCGAG TGCGTGTCGG CGCTCGAGCG CGAGGGAGCC ATGGTGTTGC CGGCTGTGAA AGCAGCAGCT GCTGCGGCCG CCAAGGCTGC GAAGAAGGCT GCTCCCAAAG TGCCCAAGGC TCCGGGAGCC GTGGGCAGTC ACGGCCTGAC CAAGGCCTTC ACCGTTTCTC CCGCCTTGAA GAAGTTCGTC GGTACTGCCG AAATCAGTCG GACCGAGACG ATGAAGAAGC TTTGGGCGTA TATTAAGGAC AAGAACCTTC AGGTCTGTTA GCAGATTCGT TTGAACTCTT TGCTTCCATT TCCTTTCTCT CGTTCGATTC CTGCTGAAGC GCTACTGGTC CATTTTTTCT TTATAGCAAG GGTAGCTCCG ATCATTGACC AGTGTCGATT GTAAAATTGA TTGAAAGTTT TTGCGCCGTT TTTTTTTTGT TGCGTTACAC CCAGTTTCTT CGAATGAAAC CTAAGTGAAT AGCCGATCAG ACGTGGCATT CCTCACTAGG AGGCTTGATT TTTACCGGGG GTTTCATATC GAACGTTCTT TCCCCGATAA ACCTCTGCAC TAAGAGCAAT TCCAAAGTAG TGCAAGTCCT GCATTGTACG TCCTCGTATC GCCTTCCAAG GACTTTAGTT GTTGTGAGTG AGCACGTAAT GGGGGAAGGT TGACGTCACG GCACGAACGA TTCTCGCCCG GAGTATAACT CCTACACGTA GATTCAGTGG AGGACAAGTA TTTAAAGCTG AGCGTATGGC TTTTATTATT GATTAGCTTC TCTAGTTAGG CTAGGCTCCA TTCTTCAGTT CAGAGTGCTG CAAAGGGCCT GTGTGCAGGA CCCTATCGAG AAGGAAGAAA AAACGAGTAC CTTCCAAAAC TTGCCTCTGA CGCAACGCGG AATTGCAGTG CCAGTACTTA AACCCAGCTT ACAGTTATAA GCATTGACGA GTTGCAAAGA CCTTTCGGAA TGTTATCGTT CGAGAATCAC TGTTAAGCTC CGCAAAGTAG AATAGTGATG ACTGGAGTTG CAGTGATGAT ACCGATTTTC TGAAGAATTG TATCTGTCTG GAAATTTTTT CGGGATTTTG CGCTGATATC ATATGTTGTT TTTGTTCAGG ACCCTATGGC AAAGAGAGAA ATAGTTTGTG ATGAGACTTT GAAGCAACTC TTTCCCGAGA AAGAACGAAT CAACTTTCTT GAGATCCCAC GGTTGCTATC AGCCCATTTT CCCAAGAAGG GCCAATCCTG ATCTCTTTCG ACGAGGTAAG CGGCTAGATC GCTCATTCTT AGTTTAGCTC CTCGCGTGTA GATTTGACAT AGTGATTCAA CGTGTTGTAA GGCCTGTGTA GCTTGAATGT TTGTTCTCAA AGCCTCGAAT CTCCTGGTGG CCTATATATT CTATCTCTTG TTTTCTCTTA CGTTTACCCC AAGCTGCGTT GCCTTCTCTC CCCAGTCAGA AGTTGTATGG GTGTTTTCAT ATGCGTTCAG ATATGTGGTC CTTTCTTTTG ACTTTTTTTC GCTTGTAATC AGTTGGTTAT ATAGCTGGCA AAGGACATTG AAACTAGTGG AAGTTCTTCG TCATTTGTAA TTGCTATACT TTGTTAGCAA CACATAATGT GGGTAAGACG TTGTTTGGTT CTCTGTCTGT TTCTGCAGTC ATATGTGGTT CCAGTCTTGA TTGTACGTCT TGAATAAATT GTAAGGTTTT CCCTTTCTTC TGCCTTCAAG AGTTACAAAT TAGAGGCCCT AAGCTATCTC GCATCGAGGA ATTGCTTGTT ACAATTGTTT ATCCTATCTA AGACAGGAGG TAGTATCCTT TACACATGGA CTCCACGACT TTGTAATTAT CAATCAAAGT GATGATCTTT GCTGGAAATC AATGAAATTC GAAGTCTTAG CGATGCTAGT TATTTGTTTG AAGTGGGTGC ATAGGAGTTT TGCGGCCTAT AGGCAATTCT GAGAAATTGT TTTCGTGTTG AGTGCAGATA TCCTGTACAT TCAGTGTCGA ATCACCCGCC AGTGAAAATG GCTGTGCATA CTTTTGGGAG CAAAATACTA TTGTCATGAA CTTGATTCCA GGAGCACTCC CCGAGGAACT TTTATGTTGG GTAACATTTT AACTGCAGTC AGTTTGATCT GTCCTTTTCA TCATAAGGTC CGAAGTGTTA CAGACAGGCT TGGCTTGATA CTCAGCGAGG ATAGTCGATG ACAATCTACA CGGAATCTAG AGAACGCGAA GAGTCGGTCA CGTAGAATCA GATGCTCTAT GCATATGCAC TGTCTATATC CAGCACTCTC GTCTTGGTGA CCAATGTTTT TGGATCAGCT TCTGATGGTT ATGATAAAGA ATCCAGTGAG AGGTGGATAT GCTCCTACAA GCACGCATGT ATGCGAAGTT TTCCTTCAAT CTGCACTCCG AAAGATTCAG GAAAGCAGCA GTACACTTGT GAAAATTATG TACTTAAGAG AGAGTCTTTG CTGTGAATAT GCCAGATAGG GCGAGTTACG CCTCCCTGGA AATGCCACCT TGCAACATCC CCGTCGTGGG ACTTTCTGTG TGAAATTTTT ACATTTTATC TTCTATCATG GCTGGCCTGG CCAAA |
mRNA UTR + CDS |
| >Mp8g06280.1 CTAACTATAC CCATTGAACA AAGGTCTATT TCAGAAAATA TTACAGTGAA TTAGTTTGTG ATATCTTTTA TAGAATAAGG GCTTCAAATG CCACTCGTTC ATATTTTCTA TCGATTGCAT AATATCTGAC GCCGAACGAG ATCCCCCAGT CGTGATGTTA TCAGATCCTA GCTCACTGTT TCGCTATATT CAATCGCATT CCTCTCGACG GCGTATCCCC AATTCCTCCG TGAAGAAAAC TGCAATCGTT CCCCCTCGCT GATATTGAGG CAATCGCTTC ACACAGCTCA CTGAGATCCG CACCACGTGC ACACTGCCCA TGGTTGCTGC CACTTGCTCG GAACCAGCCG CCCACCACAC TCCATTCGCG AAATCGCTTC TCGGTTCACG GATCTTAGAC ATTTGGTTGC GACGACGAAA TCGATTGCGA AGGCCGAGGC GTGGGTCCCA AGGGTTTCCT TTTGCGCACA ACGGGCGCTA AACCCCCCCC TTTTCCTCCC TCGCTCTCGC GCTCGCTCGC TCGCTCGCAA AACCTCGGGC CATAACGTTC GCCTCGCTTC TTGTCTTCTT GCTGGCTCGT GGGCCGCTGG TGTGTCAGTC AGTCAGCCCT AGCGACATTC GACCGGGCTC GTAGAGCTCG TGATAAGTTT AGCAGTTTTC CTCGAGCTGC ACTTTGGTCG CGTTCCGCTT CCGCCTCTGG GATCGGAAAT CGTGTAATTT CGATTGCGAG TGCGTGTCGG CGCTCGAGCG CGAGGGAGCC ATGGTGTTGC CGGCTGTGAA AGCAGCAGCT GCTGCGGCCG CCAAGGCTGC GAAGAAGGCT GCTCCCAAAG TGCCCAAGGC TCCGGGAGCC GTGGGCAGTC ACGGCCTGAC CAAGGCCTTC ACCGTTTCTC CCGCCTTGAA GAAGTTCGTC GGTACTGCCG AAATCAGTCG GACCGAGACG ATGAAGAAGC TTTGGGCGTA TATTAAGGAC AAGAACCTTC AGGACCCTAT GGCAAAGAGA GAAATAGTTT GTGATGAGAC TTTGAAGCAA CTCTTTCCCG AGAAAGAACG AATCAACTTT CTTGAGATCC CACGGTTGCT ATCAGCCCAT TTTCCCAAGA AGGGCCAATC CTGATCTCTT TCGACGAGAT ATCCTGTACA TTCAGTGTCG AATCACCCGC CAGTGAAAAT GGCTGTGCAT ACTTTTGGGA GCAAAATACT ATTGTCATGA ACTTGATTCC AGGAGCACTC CCCGAGGAAC TTTTATGTTG GGTAACATTT TAACTGCAGT CAGTTTGATC TGTCCTTTTC ATCATAAGGT CCGAAGTGTT ACAGACAGGC TTGGCTTGAT ACTCAGCGAG GATAGTCGAT GACAATCTAC ACGGAATCTA GAGAACGCGA AGAGTCGGTC ACGTAGAATC AGATGCTCTA TGCATATGCA CTGTCTATAT CCAGCACTCT CGTCTTGGTG ACCAATGTTT TTGGATCAGC TTCTGATGGT TATGATAAAG AATCCAGTGA GAGGTGGATA TGCTCCTACA AGCACGCATG TATGCGAAGT TTTCCTTCAA TCTGCACTCC GAAAGATTCA GGAAAGCAGC AGTACACTTG TGAAAATTAT GTACTTAAGA GAGAGTCTTT GCTGTGAATA TGCCAGATAG GGCGAGTTAC GCCTCCCTGG AAATGCCACC TTGCAACATC CCCGTCGTGG GACTTTCTGT GTGAAATTTT TACATTTTAT CTTCTATCAT GGCTGGCCTG GCCAAA |
CDS |
| >Mp8g06280.1 ATGGTGTTGC CGGCTGTGAA AGCAGCAGCT GCTGCGGCCG CCAAGGCTGC GAAGAAGGCT GCTCCCAAAG TGCCCAAGGC TCCGGGAGCC GTGGGCAGTC ACGGCCTGAC CAAGGCCTTC ACCGTTTCTC CCGCCTTGAA GAAGTTCGTC GGTACTGCCG AAATCAGTCG GACCGAGACG ATGAAGAAGC TTTGGGCGTA TATTAAGGAC AAGAACCTTC AGGACCCTAT GGCAAAGAGA GAAATAGTTT GTGATGAGAC TTTGAAGCAA CTCTTTCCCG AGAAAGAACG AATCAACTTT CTTGAGATCC CACGGTTGCT ATCAGCCCAT TTTCCCAAGA AGGGCCAATC CTGA |
Protein |
| >Mp8g06280.1 MVLPAVKAAA AAAAKAAKKA APKVPKAPGA VGSHGLTKAF TVSPALKKFV GTAEISRTET MKKLWAYIKD KNLQDPMAKR EIVCDETLKQ LFPEKERINF LEIPRLLSAH FPKKGQS |