Mp8g06400



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature.
ProSiteProfiles PS50011 Protein kinase domain profile.
Pfam PF00564 PB1 domain
ProSiteProfiles PS51745 PB1 domain profile.
Coils Coil Coil
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1
Gene3D G3DSA:3.10.20.90 -
Pfam PF07714 Protein tyrosine and serine/threonine kinase
PANTHER PTHR23257 SERINE-THREONINE PROTEIN KINASE
SUPERFAMILY SSF56112 Protein kinase-like (PK-like)
FunFam G3DSA:1.10.510.10:FF:000142 Octicosapeptide/phox/Bem1p domain kinase superfamily protein
SUPERFAMILY SSF54277 CAD & PB1 domains
ProSitePatterns PS00107 Protein kinases ATP-binding region signature.
CDD cd06410 PB1_UP2
SMART SM00666 PB1_new
PRINTS PR00109 Tyrosine kinase catalytic domain signature
CDD cd13999 STKc_MAP3K-like
FunFam G3DSA:3.10.20.90:FF:000058 Octicosapeptide/phox/Bem1p domain kinase superfamily protein
FunFam G3DSA:3.30.200.20:FF:000081 Octicosapeptide/phox/Bem1p domain kinase superfamily protein
SMART SM00220 serkin_6
KOG KOG0192 Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs; [T]
KOG KOG4210 Nuclear localization sequence binding protein; N-term missing; [K]
MapolyID Mapoly0013s0150 -
GO GO:0005524 ATP binding
GO GO:0005515 protein binding
GO GO:0004672 protein kinase activity
GO GO:0006468 protein phosphorylation
GO GO:0007165 signal transduction
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpPRAF Raf-like protein kinase, subfamily B4 Published

Associated Literature (AI-based literature mining, Beta-version)

B4-group Raf-like protein kinase (Mapoly0013s0150); phosphorylation changes rapidly with photosynthetic activity and it regulates photosynthetic carbohydrate metabolism (phospho-mutant analyses).

1 core 1 peripheral

Koide, E., et al. (2020) · Plant and Cell Physiology  research experimental subject
B4-group Raf-like protein kinase (Mapoly0013s0150); phosphorylation changes rapidly with photosynthetic activity and it regulates photosynthetic carbohydrate metabolism (phospho-mutant analyses).
Shinkawa, H., et al. (2022) · Plant & Cell Physiology  research experimental comparator
B4 Raf-like kinase; referenced.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g06400.1 chr8:8744636..8753728 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g06400 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g06400 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.