Mp8g07850



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF02309 AUX/IAA family
SUPERFAMILY SSF54277 CAD & PB1 domains
PANTHER PTHR31734 AUXIN-RESPONSIVE PROTEIN IAA17
Gene3D G3DSA:3.10.20.90 -
ProSiteProfiles PS51745 PB1 domain profile.
KOG KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230; N-term missing; [K]
MapolyID Mapoly0013s0010 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0005634 nucleus
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpncIAA co-repressor, AUX/IAAs, Hormone related protein, Auxin related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

co-repressor, AUX/IAAs, Hormone related protein, Auxin related protein (from nomenclature)

0 core 1 peripheral

Das, S., et al. (2024) · Plant Communications  research citation background
Non-canonical Aux/IAA mentioned in passing as a component of the minimal Marchantia auxin module.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g07850.1 chr8:10278008..10284640 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g07850.2 chr8:10278156..10283639 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g07850 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g07850 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.