Mp8g09440



Description

Annotation

Database ID Description
PANTHER PTHR11654 OLIGOPEPTIDE TRANSPORTER-RELATED
CDD cd17419 MFS_NPF7
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00854 POT family
Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
SUPERFAMILY SSF103473 MFS general substrate transporter
KOG KOG1237 H+/oligopeptide symporter; [E]
MapolyID Mapoly0204s0004 -
GO GO:0055085 transmembrane transport
GO GO:0022857 transmembrane transporter activity
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpNPF34 NPF transporter Provisional

Associated Literature (AI-based literature mining, Beta-version)

NPF transporter (from nomenclature)

0 core 1 peripheral

Kulshrestha, S., et al. (2022) · Journal of Experimental Botany  review citation background
nitrate transporter 1.5

Transcript models

Transcript ID Location Sequences Extract region
Mp8g09440.1 chr8:12503969..12511445 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g09440.2 chr8:12503764..12511442 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g09440 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g09440 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.