Mp8g09930
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF64356 | SNARE-like |
| Gene3D | G3DSA:1.20.5.110 | - |
| ProSiteProfiles | PS50859 | Longin domain profile. |
| CDD | cd14824 | Longin |
| Gene3D | G3DSA:3.30.450.50 | Longin domain |
| Pfam | PF00957 | Synaptobrevin |
| ProSiteProfiles | PS50892 | v-SNARE coiled-coil homology domain profile. |
| Pfam | PF13774 | Regulated-SNARE-like domain |
| CDD | cd15843 | R-SNARE |
| PANTHER | PTHR21136 | SNARE PROTEINS |
| SMART | SM01270 | Longin_2 |
| SUPERFAMILY | SSF58038 | SNARE fusion complex |
| PRINTS | PR00219 | Synaptobrevin signature |
| KOG | KOG0859 | Synaptobrevin/VAMP-like protein; [U] |
| MapolyID | Mapoly0008s0229 | - |
| GO | GO:0016192 | vesicle-mediated transport |
| GO | GO:0016020 | membrane |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpVAMP72C | Ortholog of Arabidopsis VAMP72 genes | Published |
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of Arabidopsis VAMP72 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. The protein harbors the consensus sequence for N-myristoylation in addition to functional domains constituting conventional VAMP7 members. (from nomenclature)
0 core 1 peripheral
Kanazawa, T., et al. (2016)
· Plant and Cell Physiology research sequence comparator
VAMP72 R-SNARE with liverwort-unique structure; family inventory.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp8g09930 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp8g09930.1 ATGGGATCGA TTCTTAGCAG TAGATCAAGC CATTCTTCGC CCCGGGCGAA GAATGGCTTG ATCTACAGCT TCGTGGCTCG AGGACCGGGG CCGCAAGTGG TGGTGCTGGC GGAGTACACG CCGGTCAAGG GCAATTTCAA AAAGATCGCC CTCGAGTGCG CGCAGACGCT GGATGCGAAC AACCACAGCG TCACGTACAC ACGCGACAGC CACACCTTCA ACTTCCTGGT CGAGGACGGG TTCGCGTACC TGGTGGTGGC GGAGGAGAGC CTCCGGTGGA TCCCGTTCGC GTTCCTGGCC CTAGTGAAGG ATGATTTCCG GGAAAAGTTT CCGGGCGCGT ACAAGGACAA GGCAAACAGC TTGAACAAGC GGTTCCGGCC GATCATGAAG AAGCACATGA CCTTCTGCGT TAATCGCCCC GAGGAGCTCG ACAAGGTGGC CAATATCCAA AACCAGTTGG ACGAGATGAA GGGCATCGCG TGGAGACACA TCAACAAGTT CATGGATCAC CAAGAGCGCC TCGAGGACGT CTTTAAGAAG TCAGGCAGTC TGGTCAACGA GGCGCAGCAC TTCCAGAGGA GGACCAACAG GCTCAAGATC TACCTCTGTT GTCAGAGCAT GAAGGTCAAG CTCATCGTGC TCCTGCTCAT CGTCCTCTTG GCCGTCGTCC TCTGGCTCTT CATCTGCCTC GACGGCAGCG GCAACAACAC CCCCGCTTGT AATCAAGCTC ATCTTGTAAT CAATCTGGGT TTTAGATTTC TCAAAAGTTG TATAGATTTT TTATGAAAAA ATTAACATAA |
mRNA UTR + CDS |
| >Mp8g09930.1 ATGGGATCGA TTCTTAGCAG TAGATCAAGC CATTCTTCGC CCCGGGCGAA GAATGGCTTG ATCTACAGCT TCGTGGCTCG AGGACCGGGG CCGCAAGTGG TGGTGCTGGC GGAGTACACG CCGGTCAAGG GCAATTTCAA AAAGATCGCC CTCGAGTGCG CGCAGACGCT GGATGCGAAC AACCACAGCG TCACGTACAC ACGCGACAGC CACACCTTCA ACTTCCTGGT CGAGGACGGG TTCGCGTACC TGGTGGTGGC GGAGGAGAGC CTCCGGTGGA TCCCGTTCGC GTTCCTGGCC CTAGTGAAGG ATGATTTCCG GGAAAAGTTT CCGGGCGCGT ACAAGGACAA GGCAAACAGC TTGAACAAGC GGTTCCGGCC GATCATGAAG AAGCACATGA CCTTCTGCGT TAATCGCCCC GAGGAGCTCG ACAAGGTGGC CAATATCCAA AACCAGTTGG ACGAGATGAA GGGCATCGCG TGGAGACACA TCAACAAGTT CATGGATCAC CAAGAGCGCC TCGAGGACGT CTTTAAGAAG TCAGGCAGTC TGGTCAACGA GGCGCAGCAC TTCCAGAGGA GGACCAACAG GCTCAAGATC TACCTCTGTT GTCAGAGCAT GAAGGTCAAG CTCATCGTGC TCCTGCTCAT CGTCCTCTTG GCCGTCATTT CTCAAAAGTT GTATAGATTT TTTATGAAAA AATTAACATA A |
CDS |
| >Mp8g09930.1 ATGGGATCGA TTCTTAGCAG TAGATCAAGC CATTCTTCGC CCCGGGCGAA GAATGGCTTG ATCTACAGCT TCGTGGCTCG AGGACCGGGG CCGCAAGTGG TGGTGCTGGC GGAGTACACG CCGGTCAAGG GCAATTTCAA AAAGATCGCC CTCGAGTGCG CGCAGACGCT GGATGCGAAC AACCACAGCG TCACGTACAC ACGCGACAGC CACACCTTCA ACTTCCTGGT CGAGGACGGG TTCGCGTACC TGGTGGTGGC GGAGGAGAGC CTCCGGTGGA TCCCGTTCGC GTTCCTGGCC CTAGTGAAGG ATGATTTCCG GGAAAAGTTT CCGGGCGCGT ACAAGGACAA GGCAAACAGC TTGAACAAGC GGTTCCGGCC GATCATGAAG AAGCACATGA CCTTCTGCGT TAATCGCCCC GAGGAGCTCG ACAAGGTGGC CAATATCCAA AACCAGTTGG ACGAGATGAA GGGCATCGCG TGGAGACACA TCAACAAGTT CATGGATCAC CAAGAGCGCC TCGAGGACGT CTTTAAGAAG TCAGGCAGTC TGGTCAACGA GGCGCAGCAC TTCCAGAGGA GGACCAACAG GCTCAAGATC TACCTCTGTT GTCAGAGCAT GAAGGTCAAG CTCATCGTGC TCCTGCTCAT CGTCCTCTTG GCCGTCATTT CTCAAAAGTT GTATAGATTT TTTATGAAAA AATTAACATA A |
Protein |
| >Mp8g09930.1 MGSILSSRSS HSSPRAKNGL IYSFVARGPG PQVVVLAEYT PVKGNFKKIA LECAQTLDAN NHSVTYTRDS HTFNFLVEDG FAYLVVAEES LRWIPFAFLA LVKDDFREKF PGAYKDKANS LNKRFRPIMK KHMTFCVNRP EELDKVANIQ NQLDEMKGIA WRHINKFMDH QERLEDVFKK SGSLVNEAQH FQRRTNRLKI YLCCQSMKVK LIVLLLIVLL AVISQKLYRF FMKKLT |