Mp8g10660



Description

Annotation

Database ID Description
CDD cd22161 F-box_AtSKP2-like
Gene3D G3DSA:1.20.1280.50 -
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
KEGG K03875 F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
KOG KOG4341 F-box protein containing LRR; C-term missing; [R]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR13382 MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Pfam PF00646 F-box domain
Pfam PF13516 Leucine Rich repeat
SMART SM00367 LRR_CC_2
SUPERFAMILY SSF52047 RNI-like
SUPERFAMILY SSF81383 F-box domain
GO GO:0005737 cytoplasm
GO GO:0005515 protein binding
MapolyID Mapoly0008s0157 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSKP2A F-BOX Provisional

Associated Literature (AI-based literature mining)

F-BOX (from nomenclature)

0 core 2 peripheral

Suzuki, H., et al. (2023) · Plant Cell  research citation background
MpSKP2A mentioned in passing as a hypothetical alternative auxin receptor, the homolog of S-PHASE KINASE-ASSOCIATED PROTEIN 2.
Csicsely, E., et al. (2025) · The Plant Journal  research experimental background
Auxin-related (Mp8g10660); DE in Mpdcl1a.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g10660.3 chr8:13993824..13999062 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g10660.1 chr8:13993824..13999855 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g10660.2 chr8:13993824..14000203 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g10660 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g10660 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.