Mp8g12800



Description

Annotation

Database ID Description
CDD cd06407 PB1_NLP
Gene3D G3DSA:3.10.20.90 -
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR32002 PROTEIN NLP8
Pfam PF00564 PB1 domain
Pfam PF02042 RWP-RK domain
ProSiteProfiles PS51519 RWP-RK domain profile.
ProSiteProfiles PS51745 PB1 domain profile.
SMART SM00666 PB1_new
SUPERFAMILY SSF54277 CAD & PB1 domains
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0005515 protein binding
MapolyID Mapoly0083s0040 -

Nomenclature

Gene symbol Product Transcript ID Status
MpNIN RWP-RK domain containing protein of the NIN-like protein clade Published

Associated Literature (AI-based literature mining)

RWP-RK domain containing protein of the NIN-like protein clade (from nomenclature)

0 core 1 peripheral

Rövekamp, M., et al. (2016) · Current Biology  research sequence comparator
RWP-RK family member (Mapoly0083s0040); phylogenetic comparison.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g12800.1 chr8:16569750..16576188 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g12800 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g12800 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.