Mp8g15610



Description

Annotation

Database ID Description
FunFam G3DSA:1.10.10.10:FF:000020 SWI/SNF complex subunit SMARCC2 isoform c
Gene3D G3DSA:1.10.10.60 -
SUPERFAMILY SSF46689 Homeodomain-like
FunFam G3DSA:1.10.10.60:FF:000014 SWI/SNF complex subunit SMARCC2 isoform C
SUPERFAMILY SSF57850 RING/U-box
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd00167 SANT
Pfam PF00249 Myb-like DNA-binding domain
ProSiteProfiles PS50090 Myb-like domain profile.
SMART SM00717 sant
ProSiteProfiles PS51293 SANT domain profile.
Pfam PF04433 SWIRM domain
Coils Coil Coil
PANTHER PTHR12802 SWI/SNF COMPLEX-RELATED
ProSiteProfiles PS50934 SWIRM domain profile.
Gene3D G3DSA:1.10.10.10 -
Pfam PF16495 SWIRM-associated region 1
KEGG K11649 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
KOG KOG1279 Chromatin remodeling factor subunit and related transcription factors; [B]
MapolyID Mapoly0079s0052 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB15 transcription factor, MYB Published
MpSWI3A/B Subunit of SWITCH/SUCROSE NONFERMENTING (SWI/SNF) chromatin-remodeling complex Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g15610.1 chr8:20178155..20183158 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.