Mp8g18520



Description

Annotation

Database ID Description
SUPERFAMILY SSF53383 PLP-dependent transferases
Gene3D G3DSA:3.40.640.10 -
Pfam PF00155 Aminotransferase class I and II
CDD cd00609 AAT_like
PANTHER PTHR46383 ASPARTATE AMINOTRANSFERASE
ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
KEGG K00837 aromatic aminotransferase [EC:2.6.1.-]
KOG KOG0257 Kynurenine aminotransferase, glutamine transaminase K; [E]
MapolyID Mapoly0192s0009 -
GO GO:0009058 biosynthetic process
GO GO:0003824 catalytic activity
GO GO:0030170 pyridoxal phosphate binding

Nomenclature

Gene symbol Product Transcript ID Status
MpVAS1/PAD/ISS Auxin related protein, Hormone related protein Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g18520.1 chr8:23786020..23789896 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g18520 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g18520 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.