Mp8g11800



Description

Annotation

Database ID Description
KOG KOG4224 Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting; C-term missing; [U]
Pfam PF04564 U-box domain
Gene3D G3DSA:1.25.10.10 -
Pfam PF00514 Armadillo/beta-catenin-like repeat
SUPERFAMILY SSF48371 ARM repeat
Coils Coil Coil
SMART SM00185 arm_5
PANTHER PTHR45958 RING-TYPE E3 UBIQUITIN TRANSFERASE
SMART SM00504 Ubox_2
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain
PANTHER PTHR45958:SF6 U-BOX DOMAIN-CONTAINING PROTEIN 43
ProSiteProfiles PS51698 U-box domain profile.
SUPERFAMILY SSF57850 RING/U-box
CDD cd16664 RING-Ubox_PUB
GO GO:0004842 ubiquitin-protein transferase activity
GO GO:0005515 protein binding
GO GO:0016567 protein ubiquitination
MapolyID Mapoly0008s0036 -

Nomenclature

Gene symbol Product Transcript ID Status
MpNOP1 Plant U-box E3 Ubiquitin Ligase NOP1 Published

Transcript models

Transcript ID Location Sequences Extract region
Mp8g11800.1 chr8:13311355..13318824 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g11800.2 chr8:13311355..13318824 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.