Mp1g07390



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF54160 Chromo domain-like
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
SMART SM00298 chromo_7
Gene3D G3DSA:2.40.50.40 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
CDD cd15532 PHD2_CHD_II
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
Pfam PF00271 Helicase conserved C-terminal domain
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Gene3D G3DSA:3.40.50.10810 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Coils Coil Coil
Pfam PF00176 SNF2-related domain
SMART SM00249 PHD_3
Pfam PF00628 PHD-finger
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Gene3D G3DSA:6.10.250.1310 -
KOG KOG0384 Chromodomain-helicase DNA-binding protein; C-term missing; [K]
KOG KOG3910 Helix loop helix transcription factor; C-term missing; [K]
KOG KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230; N-term missing; [K]
KOG KOG1245 Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains); N-term missing; [B]
KOG KOG1015 Transcription regulator XNP/ATRX, DEAD-box superfamily; C-term missing; [K]
KOG KOG1015 Transcription regulator XNP/ATRX, DEAD-box superfamily; N-term missing; [K]
KOG KOG0612 Rho-associated, coiled-coil containing protein kinase; N-term missing; C-term missing; [T]
KOG KOG1873 Ubiquitin-specific protease; N-term missing; C-term missing; [O]
MapolyID Mapoly0043s0132 -
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.4 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g07390.1 chr1:7884709..7916407 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.