Mp1g08940



Description

Annotation

Database ID Description
FunFam G3DSA:3.40.50.300:FF:000687 Ras-related protein RABF2b
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00175 rab_sub_5
SMART SM00174 rho_sub_3
SMART SM00173 ras_sub_4
SMART SM00176 ran_sub_2
Pfam PF00071 Ras family
ProSiteProfiles PS51419 small GTPase Rab1 family profile.
CDD cd01860 Rab5_related
ProSiteProfiles PS51421 small GTPase Ras family profile.
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51420 small GTPase Rho family profile.
PRINTS PR00449 Transforming protein P21 ras signature
NCBIfam TIGR00231 small GTP-binding protein domain
PANTHER PTHR47978 -
KEGG K07889 Ras-related protein Rab-5C
KOG KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases; [U]
MapolyID Mapoly0036s0134 -
GO GO:0003924 GTPase activity
GO GO:0005794 Golgi apparatus
GO GO:0005525 GTP binding
GO GO:0005768 endosome

Nomenclature

Gene symbol Product Transcript ID Status
MpRAB5 RAB GTPase Published

Associated Literature (AI-based literature mining, Beta-version)

RAB GTPase; genome paper: Mapoly0036s0134.1 (from nomenclature)

0 core 6 peripheral

Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Minamino, N., et al. (2018) · Plant and Cell Physiology  research sequence comparator
Canonical RAB5; family inventory.
Kanazawa, T., et al. (2022) · Frontiers in Plant Science  research experimental tool
Multivesicular body marker (mCitrine-MpRAB5); no clear colocalization with MpSEC28, excluding MVB localization.
Westermann, J., et al. (2020) · Frontiers in Plant Science  research experimental tool
Endosomal marker shown in punctate structures, co-localizing with MpARA6 to validate dual-marker imaging.
Koebke, E., et al. (2022) · Frontiers in Plant Science  research experimental tool
Endosomal marker used to test localization specificity; showed only partial overlap with MpSPI.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g08940.1 chr1:9478181..9483126 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g08940 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g08940 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.