Mp1g12970



Description

Annotation

Database ID Description
Coils Coil Coil
SUPERFAMILY SSF47661 t-snare proteins
PIRSF PIRSF028865 Membrin-2
FunFam G3DSA:1.20.5.110:FF:000002 Vesicle transport through interaction with t-SNAREsB
Pfam PF12352 Snare region anchored in the vesicle membrane C-terminus
CDD cd15862 SNARE_Vti1
Gene3D G3DSA:1.20.58.400 -
Pfam PF05008 Vesicle transport v-SNARE protein N-terminus
FunFam G3DSA:1.20.58.400:FF:000001 Vesicle transport through interaction with t-SNAREs homolog 1A
PANTHER PTHR21230 VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
SUPERFAMILY SSF58038 SNARE fusion complex
Gene3D G3DSA:1.20.5.110 -
KEGG K08493 vesicle transport through interaction with t-SNAREs 1
KOG KOG1666 V-SNARE; [U]
MapolyID Mapoly0019s0067 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0031902 late endosome membrane
GO GO:0006906 vesicle fusion
GO GO:0005794 Golgi apparatus
GO GO:0005789 endoplasmic reticulum membrane
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0012507 ER to Golgi transport vesicle membrane
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpVTI1 Ortholog of Arabidopsis VTI1 genes Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g12970.1 chr1:13356579..13361313 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g12970.2 chr1:13356579..13361514 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.