| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. |
| SMART | SM00360 | rrm1_1 |
| Pfam | PF00076 | RNA recognition motif |
| FunFam | G3DSA:3.30.70.330:FF:000128 | Nuclear cap-binding protein subunit 2 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD |
| Gene3D | G3DSA:3.30.70.330 | - |
| CDD | cd12240 | RRM_NCBP2 |
| PANTHER | PTHR18847 | 20 KD NUCLEAR CAP BINDING PROTEIN |
| KEGG | K12883 | nuclear cap-binding protein subunit 2 |
| KOG | KOG0121 | Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily); [A] |
| MapolyID | Mapoly0001s0392 | - |
| GO | GO:0003723 | RNA binding |
| GO | GO:0000339 | RNA cap binding |
| GO | GO:0005846 | nuclear cap binding complex |
| GO | GO:0000398 | mRNA splicing, via spliceosome |
| GO | GO:0045292 | mRNA cis splicing, via spliceosome |
| GO | GO:0003676 | nucleic acid binding |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpCBP20 | RNA-binding protein | Published |
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g20560.1 GGACATCTGC AAACTTCCAG TTGGGTTCAA ATTGTTCTAA TGGCTAGGTT CGAGAGAAAA TCATGTGATT TTTGACAATA ATTAATCGGA GAGGTGGTGG GAGTGCAGAA TGTGGAAGAC GAGCAGAGTT CTGAGCGAGC TCACGACGGA CTGACAGGAC GGAACGAGAG TGAAAGACAA ACAGGCTCAG CAGCGGGACT ACAGGATTTT CTGGATCGAT GGAGAACTCG AATGTAATTA CTTGAGATCT CAATCGTGTG AATGAGGCAT AGCAGTAGGA GATTTCACCA GCGTATATTC CAGCCCTGAA GGTTTTGGAG CAATTTGGAC GATGGCCCGT CTTTTCAAGG TGGGTGCGTG CGTGTTTGCC TGATTTGAAA AGCTTCGGGT TTTGAGCATT TTCCGTTAAG AATTCGCGGT GTCTGCAACT GGTGCATTAG CTCGGGTCAG TACCAGCTTC CGGTAGAAGC GTGAAGGTCG TTGTTGCCTG AGAGGGCGTG CTTAGAAGTT TTTTAGAAGG TTGCAATACA GTCTACTAGC GTATGTTTTG TCTGCTGCAT GATATCTGCA TTTATATTCG CCATCTCGTA AGAGTGCTTT GGGAATTTCA TGAACGTGAC TCAAAACTGG AAGTGCCCTT CCAATACTGA CCAATGGGTC TGACCCGATT GCATATGCTC ACATAGAACG AAGCAGAAAT GCTGCCGGAA TTGAGCTACC ATTTAGGGTT GTGTGAGGCC CTCAATACTT TAGGGGATGT TGGACTGCTG AGTATGTGGG TCTTTCGATT ATTTGGAGGT AGAATGTGGT GTCATTTTCG CCACGTTCAT CCTTGGGCAC CATTTTGTAA GAACAATTTG AGGACTCCGT GGTTTGCTTC ACCAGAATCC GGACAAGCTT TCTGCATACC GGGATCGTAG ATTTTCGGGA ACGCAGGATG AGTTTGACCA CGCACTTCGA ACCTCCGTTA CGGTTTATGT TGGAAATCTT TCCTTCTACA CTACTGAGGA GCAGATTTAC GAGGTTTTTT CGCGAACTGG TGAAATCAAG AAAATTATCA TGGGGCTGGA CAAGAACACC AAAACTCCGT GTGGATTCTG CTTCGTCAAG TAATATCTCT AACTCATATG TGAACTGCCA GCTCGTGTGA ACTTATTGTT TGAAAAGCTT TCTATCATCC TCACCAGCAC GGTGTGCCTT CGGGAACGGT AAAGTTTTGA GGATTTTAGT TTGAATTTTC CACCAGGTTG TAGGCCACTG CTCTGACATT AAATACAAAA ATTGCCATCT TGCTAGATAT AGATGGAGAT ATATAGATGG ATAGAAATAG CAAACAGAGG ATACAGATTT TCGTGAAAAT GTCAGTTTAA GCAACCTTAA TAGGATAATT TGGTTCAAAG GTCAAATAGA GACAAGTGTG TTGGCTCGTC TAGCCATACT AGTTTGCAGG ATGTTGTGGA AGCAACCATG AACATGAAAG TGTGAAGTTA TTTACCCCTG CGACTCCTCT GATGGGTTCA AAATTGCATA ACCGACCAGG TATTACACAC GTGATGACGC TGACGATTCT GTGAAGTACA TAAGTGGAAC AATACTTGAC GATAGGCCTA TTCGAGTTGA TTTCGACTGG GGTTTCCAAG AAGGCCGTCA GTGGGGACGA GGAAGAAGTG GTGGTCAAGT GAGTCGTAGT AGATGAATTA GACATATAAA TATTGCTCTT CACCTTAGCT TAGATCAGCT GGACATGTAG TAAGCTTGAA GCCTTCGTCC CTATATATTG TTTTGAGTGA ATCGTGATCA AATTCCATTA GGTGTGTTAA ATCATGTTCT TGGACTTGTC GTTCTTTTTA TAATTTTTTG CAGTATTTTG AATGAGTATC GCGAGAAGAG ATATATGTTC AGCCTAGTTC TTCTTGTGAT AGACTGGATC TCTAAGGTGC TTAGCGCTTC TCAGTGCGAT ATTGCTCAAG ATAGCTGAGC AGTTGCCCTT CAGCTTCATT TTTACCTTTA TTACATTCCT TAGTAATATC AATGTTGGAT GCTGTTGTGC AGGTCCGTGA TGAGTACCGT ACTGATTACG ATCCTGATAT CCATCTTAAC GAGTTCTTAG GAGTTGCCTA AATTCGAAGG CATTTTTGCT TAGAAGCAAC GCATGATCAT AATTTTGTGC TTTGATTTGT TTACCACACA TTATTTTTTT ACTATATCGG GGATTTAGAT TGACCTTCTA TGTTGGTTGC TAATCTTCGT AGTTTGCTGA TGTGCACTCA CTCTGTGTTT CCGTAAGACT TCTGTTATTC ATGGAGATCA AAACTTTCAT TCTTTTTTCT TGTACATCAT ATGTACCCTT CTGTCTCAAC AAGGACTGCG GAATAGAGGC TTCCTTAACA GCTCGCTACG TAGAGGAGGA TACGGGAAGC TCGTACAGAA GGAGCTGGAA TCTCGGAGAC AGCTTGTAGA CTATGAGACT CCAGTTGGTG GTCTTGGATC TTTACCATCA TATCAACAGC AATCAAATAG CACCGGTAAG TGTCGAGTTG TTTGAAGACA AATTTGTATC TGCGAGTTCT CATTTCATCA CAATGTTTTG GGACACGTTT GTTAGATGTG GGTAATCTGT GATTGATATG AAATTATTGA ACTTTGTACA ATGCGGTCAC GGTACCCTGG TTAACCCCCG AGCTTCGCCC TCTCTATGTC GTGACCCGTT TGTTATAGAA TCAGATTTGA TACAAACAAC TCATCAATTT AAGTTTTTAA GGAGAGCTGT ATGGCCCTTA CGGCGTTTCA AGGCCACTAC TCTACTCCAC TCCACTGTTT TCTCTTTCCT ACTCATTCGT AAGCCTTTAG AAGTGTCGTA TCTGTAAACC TCCATTTTCT TTTTCCAGAG GAGGTTATTA ATTTCCTGTT TATCTCTAAC CAAGTTATTT TGATGCAATC CCCAATGCTC TGATTTTATT GTCTGATTTA CCTGGCTCCG TCCACGCTAT TTTCAGGCAT TCGCTGCCTG AAATATCTGC TCATATATAA AAAAAATATA CCTTCATATC TGCTCCTTCA AAACACTACT CTATTGTCTC TTTACCTTGT ACGTCTGGCC TTTTTTTCCG TGCTAGCACA ACCTGGGTGT GCACCTTATT CTGGATAATG TCGAAAGAAA ACCAGGTGCG CTTACACTGT TGGTAGGTTG AATCAAAATA ATATTTCTTG ATGAAGTCAA TACGGTTTAT ACTCAAAACT TTTCTGTTTT TGTAGCTTCA TGAACTATTG CACATACCAT CAGATTATTG CATGTAGTGC ACTTATAGCA GCAGGGATAA TCTCTAATCT TGCCGCAAAT TTCAAAAACT GAATCCCTCG ACGTACATGC TGACACCTTT GATGGTTATT ATGAATTGGT CAAATTATCG ACTCTTACCA CTGAAGTATA ATTATATCGT GCGGATGCTG ACTGTATAGG AGGGTTTTAA AAGGAAATGT AAATTGCCCC CAAGTTCCCT TGCTATTGTG CCGTCTACAG ATCCTCGTGA CGTCAATCAA TTGGTTACCG AGCTTCTTGG ACACAAATAT AAGAGTTGAT GAGGTCTCTG TGTTTACCTA GGTCATTCAG TCCTAGTTGT GGCAATCTAT TTCCCTACAA CGTCCTTGGA GTGATGCATT GTGACCGCAT GCCTCCTGCA TTGACTACAT ATACCTTTCG TGTTCTTACG AGGTCAAACT GTGGCATAGT ATGTGCTTAC CAGTGGCTTG CTCATACGAT AGTGATCTTA GTCTTAAATC AACATTCGGT TCGTTGTTGA CTGGCTTTAT GCCCTTGAGG CGATGATCTT TTTACACTTA CTTGCTTACT GTGAGATTTA TATGAATTTC CTTGGGCCGA ATTCAAGTCA ACAGATCTGG TGTTGTGCTC CACAAAATTT TGATCACACA TCAGATTGTA CATATTTTTA TGTCCAATGT ACGGCAACCG CTGCTGGTAC GGCGACTGTC GTCCAAAAAC TCCGGGATTG AACACTTTGT TTGCAAATGT CCTCATGCAT TTGGTTCCCA CTTGTTTTCT ATCCTATGTA TCTTACATAG AGCTGACGGT GTATTTTGTT CTCTGGCTTC CATGGTCTGT TTGAGTTGGT GTGAGAACCT TGATTCTACT ACCTGGTTTT CGCCACTGAG AGGTTGATGT GCTTTTCTGT TCTCCATCCT GCAATCAGCC TTTACTAACC ATGCCTTTCG CTTTTGTGTC TGCTTGGGTC ATTTTCGACA CGAAGATATT ACCTGCTCAT CTTTGACTGT TCTTTTCTCT GAGTGGCTTG TTTGGTAAAT GACAAACTGT CGTGTGCGTC CAGGTGGAGG AGGTGGTGGA GGGGGTTTTC GGAATAGAGG TACACTTTGT TGTCAACTTT GGTAGAAGAC TAAATTGTGT AACAGAGCCA TTCTTTCAAG CTCATGCAAC CTCAAGTTTT GAGCTGATTA CTTTGGCCCC ATTTCCACCT CCTTCAGTTT TGTTCGTAAC TAACGTAAGT TGTATCCATC TTTCAAGAGT GTATACACCA CCTTAACCAA AGTTCTGTTT TGTAAGTACA GGGAACTACA AGCGACAGAG GGAGGAAGAG CGAGCACCTG CAGATGGTGT CAAGAGAATA GATCGTGGGC CGAGACCGGT ATGCAAATAC TTCTGAACTG AATGTCGCTC TGATAGCCTA ATTTTTTTCG CACTTAAGTA TATCAGGCCT GAGGTCCAGT AGGTTCAAGT TCCAGAGGCT GGCCGTAGTT AATTATCTGT TTCAGTGCTC TAAGCTTTGA AGTTCTTGGA TTTCCTTGTT AAACATTGTA CATTCTTACA CCCATTATCT TCTTTGTAAT GAGAGCAGGA AAAAAACCCG CGGTTTCGAG AGAAAGGAGA CTCAGATGAT GAGGACGGTG GCAAAAACTA GACTAGAAAT GGTTGAAGCA GCCTTAGTTG GTGTAATGCG CTGGTCTCTG ATGATTTTCG TTACGTGGCC GATATCACTG ACTTCATTAT TTGGCTAACA GATGAAGTCA GCTGAAGTTA GGGATGTCGT CACGCTCTGG CATAGTTTAT ATAGGGATAG CCAGCTATGT TGTCGGATTT CTATCCTCTT ATCCTGAATC AGGCAACAGA TTTTGAAGGA GCTTACTGCG CAGTAAACCA CTGAAGAGTG AAGATGACGC ACATGTAATG TAAGGAGACT AGAGCTAGAT ATCAGTTGTC CGTCAAGGAG ACGCCAGCAA TAGTGCTGGA GTTTTTGTAT CAGAGATTAC TCCCTTTTTA GAAGAAGCGA TGGGTTGTGA TTGACGTGGT CAAGCTTTTT GCGACATCTA GATTCGTGAG GTGACTTGTG GTCCCTGAAA ATCACCTTCC AAAATTCTGA GGCAGGAGAG AGGTCTTCGA TGTTAGGAGC ATCGATAATT CACTCGAATT GCACATACCG TATCACAGAA ATATACGTGG GTGCCGATAT GTCAAAGCAG GTTCATTTAG A |
mRNA UTR + CDS |
| >Mp1g20560.1 GGACATCTGC AAACTTCCAG TTGGGTTCAA ATTGTTCTAA TGGCTAGGTT CGAGAGAAAA TCATGTGATT TTTGACAATA ATTAATCGGA GAGGTGGTGG GAGTGCAGAA TGTGGAAGAC GAGCAGAGTT CTGAGCGAGC TCACGACGGA CTGACAGGAC GGAACGAGAG TGAAAGACAA ACAGGCTCAG CAGCGGGACT ACAGGATTTT CTGGATCGAT GGAGAACTCG AATGTAATTA CTTGAGATCT CAATCGTGTG AATGAGGCAT AGCAGTAGGA GATTTCACCA GCGTATATTC CAGCCCTGAA GGTTTTGGAG CAATTTGGAC GATGGCCCGT CTTTTCAAGA ATCCGGACAA GCTTTCTGCA TACCGGGATC GTAGATTTTC GGGAACGCAG GATGAGTTTG ACCACGCACT TCGAACCTCC GTTACGGTTT ATGTTGGAAA TCTTTCCTTC TACACTACTG AGGAGCAGAT TTACGAGGTT TTTTCGCGAA CTGGTGAAAT CAAGAAAATT ATCATGGGGC TGGACAAGAA CACCAAAACT CCGTGTGGAT TCTGCTTCGT CAAGTATTAC ACACGTGATG ACGCTGACGA TTCTGTGAAG TACATAAGTG GAACAATACT TGACGATAGG CCTATTCGAG TTGATTTCGA CTGGGGTTTC CAAGAAGGCC GTCAGTGGGG ACGAGGAAGA AGTGGTGGTC AAGTCCGTGA TGAGTACCGT ACTGATTACG ATCCTGGTAG AGGAGGATAC GGGAAGCTCG TACAGAAGGA GCTGGAATCT CGGAGACAGC TTGTAGACTA TGAGACTCCA GTTGGTGGTC TTGGATCTTT ACCATCATAT CAACAGCAAT CAAATAGCAC CGGTGGAGGA GGTGGTGGAG GGGGTTTTCG GAATAGAGGG AACTACAAGC GACAGAGGGA GGAAGAGCGA GCACCTGCAG ATGGTGTCAA GAGAATAGAT CGTGGGCCGA GACCGGAAAA AAACCCGCGG TTTCGAGAGA AAGGAGACTC AGATGATGAG GACGGTGGCA AAAACTAGAC TAGAAATGGT TGAAGCAGCC TTAGTTGGTG TAATGCGCTG GTCTCTGATG ATTTTCGTTA CGTGGCCGAT ATCACTGACT TCATTATTTG GCTAACAGAT GAAGTCAGCT GAAGTTAGGG ATGTCGTCAC GCTCTGGCAT AGTTTATATA GGGATAGCCA GCTATGTTGT CGGATTTCTA TCCTCTTATC CTGAATCAGG CAACAGATTT TGAAGGAGCT TACTGCGCAG TAAACCACTG AAGAGTGAAG ATGACGCACA TGTAATGTAA GGAGACTAGA GCTAGATATC AGTTGTCCGT CAAGGAGACG CCAGCAATAG TGCTGGAGTT TTTGTATCAG AGATTACTCC CTTTTTAGAA GAAGCGATGG GTTGTGATTG ACGTGGTCAA GCTTTTTGCG ACATCTAGAT TCGTGAGGTG ACTTGTGGTC CCTGAAAATC ACCTTCCAAA ATTCTGAGGC AGGAGAGAGG TCTTCGATGT TAGGAGCATC GATAATTCAC TCGAATTGCA CATACCGTAT CACAGAAATA TACGTGGGTG CCGATATGTC AAAGCAGGTT CATTTAGA |
CDS |
| >Mp1g20560.1 ATGGCCCGTC TTTTCAAGAA TCCGGACAAG CTTTCTGCAT ACCGGGATCG TAGATTTTCG GGAACGCAGG ATGAGTTTGA CCACGCACTT CGAACCTCCG TTACGGTTTA TGTTGGAAAT CTTTCCTTCT ACACTACTGA GGAGCAGATT TACGAGGTTT TTTCGCGAAC TGGTGAAATC AAGAAAATTA TCATGGGGCT GGACAAGAAC ACCAAAACTC CGTGTGGATT CTGCTTCGTC AAGTATTACA CACGTGATGA CGCTGACGAT TCTGTGAAGT ACATAAGTGG AACAATACTT GACGATAGGC CTATTCGAGT TGATTTCGAC TGGGGTTTCC AAGAAGGCCG TCAGTGGGGA CGAGGAAGAA GTGGTGGTCA AGTCCGTGAT GAGTACCGTA CTGATTACGA TCCTGGTAGA GGAGGATACG GGAAGCTCGT ACAGAAGGAG CTGGAATCTC GGAGACAGCT TGTAGACTAT GAGACTCCAG TTGGTGGTCT TGGATCTTTA CCATCATATC AACAGCAATC AAATAGCACC GGTGGAGGAG GTGGTGGAGG GGGTTTTCGG AATAGAGGGA ACTACAAGCG ACAGAGGGAG GAAGAGCGAG CACCTGCAGA TGGTGTCAAG AGAATAGATC GTGGGCCGAG ACCGGAAAAA AACCCGCGGT TTCGAGAGAA AGGAGACTCA GATGATGAGG ACGGTGGCAA AAACTAG |
Protein |
| >Mp1g20560.1 MARLFKNPDK LSAYRDRRFS GTQDEFDHAL RTSVTVYVGN LSFYTTEEQI YEVFSRTGEI KKIIMGLDKN TKTPCGFCFV KYYTRDDADD SVKYISGTIL DDRPIRVDFD WGFQEGRQWG RGRSGGQVRD EYRTDYDPGR GGYGKLVQKE LESRRQLVDY ETPVGGLGSL PSYQQQSNST GGGGGGGGFR NRGNYKRQRE EERAPADGVK RIDRGPRPEK NPRFREKGDS DDEDGGKN |