Mp1g26000



Description

Annotation

Database ID Description
SUPERFAMILY SSF57850 RING/U-box
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.300 -
SMART SM00184 ring_2
Pfam PF13923 Zinc finger, C3HC4 type (RING finger)
ProSiteProfiles PS50089 Zinc finger RING-type profile.
Pfam PF00176 SNF2-related domain
CDD cd18793 SF2_C_SNF
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR45626 TRANSCRIPTION TERMINATION FACTOR 2-RELATED
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00487 ultradead3
Gene3D G3DSA:3.40.50.10810 -
SMART SM00490 helicmild6
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
CDD cd18008 DEXDc_SHPRH-like
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
ProSitePatterns PS00518 Zinc finger RING-type signature.
Pfam PF00271 Helicase conserved C-terminal domain
KOG KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; N-term missing; [KL]
MapolyID Mapoly0002s0276 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0006281 DNA repair

Nomenclature

Gene symbol Product Transcript ID Status
MpRAD5 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g26000.1 chr1:27265166..27276442 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.