Mp2g06000



Description

Annotation

Database ID Description
Pfam PF00249 Myb-like DNA-binding domain
Gene3D G3DSA:1.10.10.60 -
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.60.90 -
Gene3D G3DSA:1.10.10.10 -
PANTHER PTHR12802 SWI/SNF COMPLEX-RELATED
ProSiteProfiles PS51293 SANT domain profile.
SUPERFAMILY SSF57850 RING/U-box
Pfam PF00569 Zinc finger, ZZ type
SUPERFAMILY SSF46689 Homeodomain-like
SMART SM00717 sant
Pfam PF04433 SWIRM domain
ProSiteProfiles PS50135 Zinc finger ZZ-type profile.
ProSitePatterns PS01357 Zinc finger ZZ-type signature.
ProSiteProfiles PS50090 Myb-like domain profile.
CDD cd00167 SANT
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
Coils Coil Coil
CDD cd02336 ZZ_RSC8
FunFam G3DSA:1.10.10.60:FF:000014 SWI/SNF complex subunit SMARCC2 isoform C
FunFam G3DSA:1.10.10.10:FF:000020 SWI/SNF complex subunit SMARCC2 isoform c
ProSiteProfiles PS50934 SWIRM domain profile.
SMART SM00291 zz_5
Pfam PF16495 SWIRM-associated region 1
KEGG K11649 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
KOG KOG1279 Chromatin remodeling factor subunit and related transcription factors; [B]
KOG KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230; N-term missing; [K]
MapolyID Mapoly0021s0055 -
GO GO:0005515 protein binding
GO GO:0008270 zinc ion binding

Nomenclature

Gene symbol Product Transcript ID Status
MpSWI3C/D Subunit of SWITCH/SUCROSE NONFERMENTING (SWI/SNF) chromatin-remodeling complex 3 Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g06000.1 chr2:6741847..6748688 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g06000.2 chr2:6741847..6748743 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g06000.3 chr2:6741847..6748743 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g06000.4 chr2:6741847..6748688 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.