Mp2g16090



Description

Annotation

Database ID Description
SMART SM00091 pas_2
SMART SM00065 gaf_1
FunFam G3DSA:3.30.450.270:FF:000001 Phytochrome
NCBIfam TIGR00229 PAS domain S-box protein
SUPERFAMILY SSF55781 GAF domain-like
ProSiteProfiles PS50109 Histidine kinase domain profile.
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
FunFam G3DSA:3.30.450.20:FF:000034 Phytochrome
ProSiteProfiles PS50112 PAS repeat profile.
Gene3D G3DSA:3.30.450.40 -
PANTHER PTHR47876 OS08G0260000 PROTEIN
Pfam PF00989 PAS fold
CDD cd16932 HATPase_Phy-like
CDD cd00130 PAS
Pfam PF00360 Phytochrome region
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
Pfam PF00512 His Kinase A (phospho-acceptor) domain
CDD cd00082 HisKA
Gene3D G3DSA:1.10.287.130 -
Gene3D G3DSA:3.30.450.20 PAS domain
Pfam PF08446 PAS fold
PIRSF PIRSF000084 Phytochrome_conventional
ProSiteProfiles PS50046 Phytochrome chromophore attachment site domain profile.
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Pfam PF01590 GAF domain
SMART SM00387 HKATPase_4
Gene3D G3DSA:3.30.565.10 -
Gene3D G3DSA:3.30.450.270 -
FunFam G3DSA:3.30.450.20:FF:000039 Phytochrome
PRINTS PR01033 Phytochrome signature
ProSiteProfiles PS50113 PAC domain profile.
SMART SM00388 HisKA_10
ProSitePatterns PS00245 Phytochrome chromophore attachment site signature.
KEGG K12121 phytochrome B
KOG KOG0519 Sensory transduction histidine kinase; N-term missing; C-term missing; [T]
MapolyID Mapoly0122s0054 -
GO GO:0009585 red, far-red light phototransduction
GO GO:0000155 phosphorelay sensor kinase activity
GO GO:0005515 protein binding
GO GO:0009881 photoreceptor activity
GO GO:0042803 protein homodimerization activity
GO GO:0009584 detection of visible light
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0007165 signal transduction
GO GO:0017006 protein-tetrapyrrole linkage

Nomenclature

Gene symbol Product Transcript ID Status
MpPHY Red light/Far-red light receptor PHYTOCHROME Published

Associated Literature (AI-based literature mining, Beta-version)

The single Marchantia polymorpha phytochrome (Mp-phy/MpPHY) was tested by yeast two-hybrid and in vitro binding assays. Mp-phy interacted with Mp-PIF in a red-light-dependent manner and with Arabidopsis PIF3, with its output module (Mp-phyOPM) mediating the APA-dependent interaction, demonstrating evolutionary conservation of the phy-APA interaction.

7 core 9 peripheral

Roetzer J, Asper B, Meir Z, Edelbacher N, Merai Z, Datta S, Dolan L. (2026) · Current biology : CB  research experimental subject
Red-light receptor phytochrome; loss-of-function MpPHY mutations cause hyponasty, antagonizing MpPHOT-mediated blue-light responses.
Jeong J, Lee Y, Choi G. (2025) · Nature communications  research experimental subject
The single Marchantia polymorpha phytochrome (Mp-phy/MpPHY) was tested by yeast two-hybrid and in vitro binding assays. Mp-phy interacted with Mp-PIF in a red-light-dependent manner and with Arabidopsis PIF3, with its output module (Mp-phyOPM) mediating the APA-dependent interaction, demonstrating evolutionary conservation of the phy-APA interaction.
Pashkovskiy P, Voronkov A, Voloshin R, Vereshchagin M, Abramova A, Khalilova L, Ivanova T, Khudyakova A, Kreslavski VD, Allakhverdiev SI. (2025) · Plant physiology and biochemistry : PPB  research experimental subject
MpPHY is the sole phytochrome receptor in M. polymorpha. This study examined its role during de-etiolation under red/far-red light, finding it regulates photosynthetic gene expression and functions like PhyB under red-dominant light (promoting growth) and like PhyA under far-red-dominant light (restricting photomorphogenesis).
Pashkovskiy, P., et al. (2023) · Plant Physiology and Biochemistry  research experimental subject
Phytochrome; its transcription is highly sensitive to red light within the far-red spectrum, linking light quality to photosynthesis/chloroplast morphology in M. polymorpha.
Inoue, K., et al. (2019a) · Plant and Cell Physiology  research experimental subject
Phytochrome; mediates the far-red high-irradiance response (FR-HIR) that induces reproductive (gametangiophore) development. Mpphy mutants analyzed.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g16090.1 chr2:18418126..18424396 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g16090 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g16090 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.