Mp2g17590



Description

Annotation

Database ID Description
Gene3D G3DSA:1.25.40.80 -
NCBIfam TIGR02766 cryptochrome photoreceptor
FunFam G3DSA:1.10.579.10:FF:000003 Deoxyribodipyrimidine photo-lyase
Gene3D G3DSA:1.10.579.10 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3
Pfam PF00875 DNA photolyase
SUPERFAMILY SSF52425 Cryptochrome/photolyase, N-terminal domain
PRINTS PR00147 DNA photolyase signature
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51645 Photolyase/cryptochrome alpha/beta domain profile.
SUPERFAMILY SSF48173 Cryptochrome/photolyase FAD-binding domain
PANTHER PTHR11455 CRYPTOCHROME
Gene3D G3DSA:3.40.50.620 HUPs
Pfam PF03441 FAD binding domain of DNA photolyase
ProSitePatterns PS00394 DNA photolyases class 1 signature 1.
KEGG K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
KOG KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome; [LT]
MapolyID Mapoly0094s0027 -
GO GO:0005634 nucleus
GO GO:0009882 blue light photoreceptor activity
GO GO:0003904 deoxyribodipyrimidine photo-lyase activity
GO GO:0032922 circadian regulation of gene expression
GO GO:0009785 blue light signaling pathway
GO GO:0071949 FAD binding
GO GO:0003677 DNA binding
GO GO:0005737 cytoplasm
GO GO:0043153 entrainment of circadian clock by photoperiod

Nomenclature

Gene symbol Product Transcript ID Status
MpCRY blue-light receptor CRYPTOCHROME Published

Associated Literature (AI-based literature mining, Beta-version)

Main subject of the study. CRISPR/Cas9 knockout (Mpcry) was generated and analyzed; mutants showed asymmetric thallus growth under blue light. The gene has six exons/five introns encoding a 715-aa protein, and a Citrine-tagged MpCRY localized to nucleus and cytoplasm.

3 core 0 peripheral

Liao, J., et al. (2023) · New Phytologist  research experimental subject
Cryptochrome blue-light photoreceptor (Mp2g17590); modulates ABA signaling to regulate dormancy. OE/mutant lines alter ABA-responsive dormancy gene expression.
Zhang, L., et al. (2022b) · International Journal of Molecular Sciences  research experimental subject
Central blue-light receptor of the study; knockout lines Mpcry-7 and Mpcry-8 were generated by CRISPR/Cas9. MpCRY is degraded and phosphorylated under blue light like Arabidopsis CRY2, and constitutively interacts with MpSPA in yeast.
Li, T., et al. (2021b) · Cells  research experimental subject
Main subject of the study. CRISPR/Cas9 knockout (Mpcry) was generated and analyzed; mutants showed asymmetric thallus growth under blue light. The gene has six exons/five introns encoding a 715-aa protein, and a Citrine-tagged MpCRY localized to nucleus and cytoplasm.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g17590.1 chr2:20491806..20497964 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g17590.2 chr2:20491803..20497964 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g17590 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g17590 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.